source("http://bioconductor.org/biocLite.R")
biocLite("miRNApath")

miRNApath

miRNApath: Pathway Enrichment for miRNA Expression Data

Bioconductor version: 2.13

This package provides pathway enrichment techniques for miRNA expression data. Specifically, the set of methods handles the many-to-many relationship between miRNAs and the multiple genes they are predicted to target (and thus affect.) It also handles the gene-to-pathway relationships separately. Both steps are designed to preserve the additive effects of miRNAs on genes, many miRNAs affecting one gene, one miRNA affecting multiple genes, or many miRNAs affecting many genes.

Author: James M. Ward <jmw86069 at gmail.com> with contributions from Yunling Shi, Cindy Richards, John P. Cogswell

Maintainer: James M. Ward <jmw86069 at gmail.com>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("miRNApath")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("miRNApath")

 

PDF	R Script	miRNApath: Pathway Enrichment for miRNA Expression Data
PDF		Reference Manual
Text		NEWS

Details

biocViews	Annotation, DifferentialExpression, NetworkEnrichment, Pathways, Software, miRNA
Version	1.22.0
In Bioconductor since	BioC 2.3 (R-2.8)
License	LGPL-2.1
Depends	methods, R (>= 2.7.0)
Imports
Suggests
System Requirements
URL
Depends On Me
Imports Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	miRNApath_1.22.0.tar.gz
Windows Binary	miRNApath_1.22.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	miRNApath_1.22.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats