source("http://bioconductor.org/biocLite.R")
biocLite("goseq")

goseq

Gene Ontology analyser for RNA-seq and other length biased data

Bioconductor version: 2.13

Detects Gene Ontology and/or other user defined categories which are over/under represented in RNA-seq data

Author: Matthew Young

Maintainer: Matthew Young <myoung at wehi.edu.au>, Nadia Davidson <nadia.davidson at mcri.edu.au>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("goseq")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("goseq")

 

PDF	R Script	goseq User's Guide
PDF		Reference Manual

Details

biocViews	GO, GeneExpression, HighThroughputSequencingData, RNAseq, Software, Transcription
Version	1.14.0
In Bioconductor since	BioC 2.6 (R-2.11)
License	LGPL (>= 2)
Depends	R (>= 2.11.0), BiasedUrn, geneLenDataBase
Imports	mgcv, graphics, stats, utils, AnnotationDbi
Suggests	GO.db, edgeR, org.Hs.eg.db, rtracklayer
System Requirements
URL
Depends On Me
Imports Me
Suggests Me	oneChannelGUI

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	goseq_1.14.0.tar.gz
Windows Binary	goseq_1.14.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	goseq_1.14.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats