source("http://bioconductor.org/biocLite.R")
biocLite("flowFit")

flowFit

Estimate proliferation in cell-tracking dye studies

Bioconductor version: 2.13

This package estimate the proliferation of a cell population in cell-tracking dye studies. The package uses an R implementation of the Levenberg-Marquardt algorithm (minpack.lm) to fit a set of peaks (corresponding to different generations of cells) over the proliferation-tracking dye distribution in a FACS experiment.

Author: Davide Rambaldi

Maintainer: Davide Rambaldi <davide.rambaldi at gmail.com>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("flowFit")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowFit")

 

PDF	R Script	Fitting Functions for Flow Cytometry Data
PDF		Reference Manual

Details

biocViews	Bioinformatics, CellBasedAssays, FlowCytometry, Software
Version	1.0.0
In Bioconductor since	BioC 2.13 (R-3.0)
License	Artistic-2.0
Depends	R (>= 2.12.2)
Imports	flowCore, flowViz, graphics, methods, kza, minpack.lm, gplots
Suggests	flowFitExampleData
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	flowFit_1.0.0.tar.gz
Windows Binary	flowFit_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	flowFit_1.0.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats