source("http://bioconductor.org/biocLite.R")
biocLite("flipflop")

flipflop

Fast lasso-based isoform prediction as a flow problem

Bioconductor version: 2.13

Flipflop discovers which isoforms of a gene are expressed in a given sample together with their abundances, based on RNA-Seq read data.

Author: Elsa Bernard, Laurent Jacob, Julien Mairal and Jean-Philippe Vert

Maintainer: Elsa Bernard <elsa.bernard at mines-paristech.fr>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("flipflop")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flipflop")

 

PDF	R Script	FlipFlop: Fast Lasso-based Isoform Prediction as a Flow Problem
PDF		Reference Manual

Details

biocViews	Bioinformatics, RNAseq, Software
Version	1.0.1
In Bioconductor since	BioC 2.13 (R-3.0)
License	GPL-3
Depends	R (>= 2.10.0)
Imports	methods, Matrix, IRanges, GenomicRanges
Suggests
System Requirements
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Depends On Me
Imports Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	flipflop_1.0.1.tar.gz
Windows Binary	flipflop_1.0.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	flipflop_1.0.1.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats