source("http://bioconductor.org/biocLite.R")
biocLite("farms")

farms

FARMS - Factor Analysis for Robust Microarray Summarization

Bioconductor version: 2.13

The package provides the summarization algorithm called Factor Analysis for Robust Microarray Summarization (FARMS) and a novel unsupervised feature selection criterion called "I/NI-calls"

Author: Djork-Arne Clevert <okko at clevert.de>

Maintainer: Djork-Arne Clevert <okko at clevert.de>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("farms")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("farms")

 

PDF	R Script	Using farms
PDF		Reference Manual

Details

biocViews	GeneExpression, Microarray, Preprocessing, QualityControl, Software
Version	1.14.0
In Bioconductor since	BioC 2.7 (R-2.12)
License	LGPL (>= 2.1)
Depends	R (>= 2.8), affy(>= 1.20.0), MASS, methods
Imports	affy, MASS, Biobase(>= 1.13.41), methods, graphics
Suggests	affydata, Biobase, utils
System Requirements
URL	http://www.bioinf.jku.at/software/farms/farms.html
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	farms_1.14.0.tar.gz
Windows Binary	farms_1.14.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	farms_1.14.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats