source("http://bioconductor.org/biocLite.R")
biocLite("domainsignatures")

domainsignatures

Geneset enrichment based on InterPro domain signatures

Bioconductor version: 2.13

Find significantly enriched gene classifications in a list of functionally undescribed genes based on their InterPro domain structure.

Author: Florian Hahne, Tim Beissbarth

Maintainer: Florian Hahne <florian.hahne at novartis.com>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("domainsignatures")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("domainsignatures")

 

PDF	R Script	Gene set enrichment using InterPro domain signatures
PDF		Reference Manual

Details

biocViews	Annotation, GeneSetEnrichment, Pathways, Software
Version	1.22.0
In Bioconductor since	BioC 2.3 (R-2.8)
License	Artistic-2.0
Depends	R (>= 2.4.0), KEGG.db, prada, biomaRt, methods
Imports	AnnotationDbi
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System Requirements
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Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	domainsignatures_1.22.0.tar.gz
Windows Binary	domainsignatures_1.22.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	domainsignatures_1.22.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats