source("http://bioconductor.org/biocLite.R")
biocLite("Rsubread")

Rsubread

Rsubread: high-performance read alignment, quantification and mutation discovery

Bioconductor version: 2.13

This R package provides easy-to-use tools for analyzing next-gen sequencing read data. Functions of these tools include quality assessment, read alignment, read summarization, exon-exon junction detection, absolute expression calling and SNP calling. These tools are highly efficient and accurate. They can be used to anlayze data generated from all major sequencing platforms such as Illumina GA/HiSeq/MiSeq, Roche GS-FLX, ABI SOLiD and LifeTech Ion PGM/Proton sequencers. This package can be installed on multiple operating systems incluidng Linux, Mac OS X, FreeBSD and Solaris.

Author: Wei Shi and Yang Liao with contributions from Jenny Zhiyin Dai and Timothy Triche, Jr.

Maintainer: Wei Shi <shi at wehi.edu.au>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("Rsubread")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rsubread")

 

PDF	R Script	Rsubread Vignette
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, ChIPseq, GeneExpression, GeneRegulation, GeneticVariability, Genetics, HighThroughputSequencing, Preprocessing, QualityControl, RNAseq, SNP, SequenceAnnotation, SequenceMatching, Sequencing, Software
Version	1.12.6
In Bioconductor since	BioC 2.8 (R-2.13)
License	GPL-3
Depends
Imports
Suggests
System Requirements
URL	http://bioconductor.org/packages/release/bioc/html/Rsubread.html
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	Rsubread_1.12.6.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard)	Rsubread_1.12.6.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats