source("http://bioconductor.org/biocLite.R")
biocLite("RefPlus")

RefPlus

A function set for the Extrapolation Strategy (RMA+) and Extrapolation Averaging (RMA++) methods.

Bioconductor version: 2.13

The package contains functions for pre-processing Affymetrix data using the RMA+ and the RMA++ methods.

Author: Kai-Ming Chang <kaiming at gmail.com>, Chris Harbron <Chris.Harbron at astrazeneca.com>, Marie C South <Marie.C.South at astrazeneca.com>

Maintainer: Kai-Ming Chang <kaiming at gmail.com>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("RefPlus")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RefPlus")

 

PDF		An_Exploration_of_Extensions_to_the_RMA_Algorithm.pdf
PDF		Extensions_to_RMA_Algorithm.pdf
PDF	R Script	RefPlus Manual
PDF		Reference Manual

Details

biocViews	Microarray, OneChannel, Preprocessing, Software
Version	1.32.0
In Bioconductor since	BioC 2.0 (R-2.5)
License	GPL (>= 2)
Depends	R (>= 2.8.0), Biobase(>= 2.1.0), affy(>= 1.20.0), affyPLM(>= 1.18.0), preprocessCore(>= 1.4.0)
Imports
Suggests	affydata
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	RefPlus_1.32.0.tar.gz
Windows Binary	RefPlus_1.32.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	RefPlus_1.32.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats