source("http://bioconductor.org/biocLite.R")
biocLite("Rbowtie")

Rbowtie

R bowtie wrapper

Bioconductor version: 2.13

This package provides an R wrapper around the popular bowtie short read aligner and around SpliceMap, a de novo splice junction discovery and alignment tool. The package is used by the QuasR bioconductor package. We recommend to use the QuasR package instead of using Rbowtie directly.

Author: Florian Hahne, Anita Lerch, Michael B Stadler

Maintainer: Michael Stadler <michael.stadler at fmi.ch>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("Rbowtie")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rbowtie")

 

PDF	R Script	An introduction to Rbowtie
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	HighThroughputSequencing, Software
Version	1.2.0
In Bioconductor since	BioC 2.12 (R-3.0)
License	Artistic-1.0 | file LICENSE
Depends
Imports
Suggests	parallel
System Requirements
URL
Depends On Me	QuasR
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	Rbowtie_1.2.0.tar.gz
Windows Binary	Rbowtie_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	Rbowtie_1.2.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats