source("http://bioconductor.org/biocLite.R")
biocLite("OCplus")

OCplus

Operating characteristics plus sample size and local fdr for microarray experiments

Bioconductor version: 2.13

This package allows to characterize the operating characteristics of a microarray experiment, i.e. the trade-off between false discovery rate and the power to detect truly regulated genes. The package includes tools both for planned experiments (for sample size assessment) and for already collected data (identification of differentially expressed genes).

Author: Yudi Pawitan <Yudi.Pawitan at ki.se> and Alexander Ploner <Alexander.Ploner at ki.se>

Maintainer: Alexander Ploner <Alexander.Ploner at ki.se>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("OCplus")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("OCplus")

 

PDF	R Script	OCplus Introduction
PDF		Reference Manual

Details

biocViews	Bioinformatics, DifferentialExpression, Microarray, MultipleComparisons, Software
Version	1.36.0
In Bioconductor since	BioC 1.8 (R-2.3)
License	LGPL
Depends	R (>= 2.1.0), akima
Imports	multtest(>= 1.7.3), graphics, grDevices, stats
Suggests
System Requirements
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Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	OCplus_1.36.0.tar.gz
Windows Binary	OCplus_1.36.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	OCplus_1.36.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats