To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("NuPoP")
In most cases, you don't need to download the package archive at all.
Bioconductor version: 2.13
NuPoP is an R package for Nucleosome Positioning Prediction.This package is built upon a duration hidden Markov model proposed in Xi et al, 2010; Wang et al, 2008. The core of the package was written in Fotran. In addition to the R package, a stand-alone Fortran software tool is also available at http://nucleosome.stats.northwestern.edu.
Author: Ji-Ping Wang <jzwang at northwestern.edu>; Liqun Xi <lxi700 at northwestern.edu>
Maintainer: Ji-Ping Wang<jzwang at northwestern.edu>
Citation (from within R,
enter citation("NuPoP")
):
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("NuPoP")
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("NuPoP")
R Script | An R package for Nucleosome positioning prediction | |
NuPoP-manual.pdf | ||
Reference Manual |
biocViews | Classification, Genetics, Software, Visualization |
Version | 1.12.0 |
In Bioconductor since | BioC 2.7 (R-2.12) |
License | GPL-2 |
Depends | R (>= 2.10) |
Imports | |
Suggests | |
System Requirements | |
URL | |
Depends On Me | |
Imports Me | |
Suggests Me |
Follow Installation instructions to use this package in your R session.
Package Source | NuPoP_1.12.0.tar.gz |
Windows Binary | NuPoP_1.12.0.zip (32- & 64-bit) |
Mac OS X 10.6 (Snow Leopard) | NuPoP_1.12.0.tgz |
Browse/checkout source | (username/password: readonly) |
Package Downloads Report | Download Stats |
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