source("http://bioconductor.org/biocLite.R")
biocLite("NOISeq")

NOISeq

Exploratory analysis and differential expression for RNA-seq data

Bioconductor version: 2.13

Analysis of RNA-seq expression data or other similar kind of data. Exploratory plots to evualuate saturation, count distribution, expression per chromosome, type of detected features, features length, etc. Differential expression between two experimental conditions with no parametric assumptions.

Author: Sonia Tarazona, Pedro Furio-Tari, Alberto Ferrer and Ana Conesa

Maintainer: Sonia Tarazona <starazona at cipf.es>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("NOISeq")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("NOISeq")

 

PDF	R Script	NOISeq User's Guide
PDF		QCreport.pdf
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, DifferentialExpression, HighThroughputSequencing, RNAseq, Software, Visualization
Version	2.6.0
In Bioconductor since	BioC 2.11 (R-2.15)
License	Artistic-2.0
Depends	R (>= 2.13.0), methods, Biobase(>= 2.13.11), splines (>= 3.0.1)
Imports
Suggests
System Requirements
URL
Depends On Me	metaSeq
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	NOISeq_2.6.0.tar.gz
Windows Binary	NOISeq_2.6.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	NOISeq_2.6.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats