source("http://bioconductor.org/biocLite.R")
biocLite("LPEadj")

LPEadj

A correction of the local pooled error (LPE) method to replace the asymptotic variance adjustment with an unbiased adjustment based on sample size.

Bioconductor version: 2.13

Two options are added to the LPE algorithm. The original LPE method sets all variances below the max variance in the ordered distribution of variances to the maximum variance. in LPEadj this option is turned off by default. The second option is to use a variance adjustment based on sample size rather than pi/2. By default the LPEadj uses the sample size based variance adjustment.

Author: Carl Murie <carl.murie at mcgill.ca>, Robert Nadon <robert.nadon at mcgill.ca>

Maintainer: Carl Murie <carl.murie at mcgill.ca>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("LPEadj")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("LPEadj")

 

PDF	R Script	LPEadj test for microarray data with small number of replicates
PDF		Reference Manual

Details

biocViews	Bioinformatics, Microarray, Proteomics, Software
Version	1.22.0
In Bioconductor since	BioC 2.3 (R-2.8)
License	LGPL
Depends	LPE
Imports	LPE, stats
Suggests
System Requirements
URL
Depends On Me
Imports Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	LPEadj_1.22.0.tar.gz
Windows Binary	LPEadj_1.22.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	LPEadj_1.22.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats