source("http://bioconductor.org/biocLite.R")
biocLite("HiTC")

HiTC

High Throughput Chromosome Conformation Capture analysis

Bioconductor version: 2.13

The HiTC package was developed to explore high-throughput 'C' data such as 5C or Hi-C.

Author: Nicolas Servant

Maintainer: Nicolas Servant <nicolas.servant at curie.fr>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("HiTC")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HiTC")

 

PDF	R Script	Hight-Throughput Chromosome Conformation Capture analysis
PDF		Reference Manual
Text		NEWS

Details

biocViews	HighThroughputSequencing, Sequencing, Software
Version	1.6.0
In Bioconductor since	BioC 2.10 (R-2.15)
License	Artistic-2.0
Depends	R (>= 2.15.0), methods, GenomicRanges, IRanges, Matrix, RColorBrewer
Imports	methods, Biobase, Biostrings, graphics, grDevices, rtracklayer
Suggests	rtracklayer, BiocStyle
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	HiTC_1.6.0.tar.gz
Windows Binary	HiTC_1.6.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	HiTC_1.6.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats