source("http://bioconductor.org/biocLite.R")
biocLite("GeneRegionScan")

GeneRegionScan

GeneRegionScan

Bioconductor version: 2.13

A package with focus on analysis of discrete regions of the genome. This package is useful for investigation of one or a few genes using Affymetrix data, since it will extract probe level data using the Affymetrix Power Tools application and wrap these data into a ProbeLevelSet. A ProbeLevelSet directly extends the expressionSet, but includes additional information about the sequence of each probe and the probe set it is derived from. The package includes a number of functions used for plotting these probe level data as a function of location along sequences of mRNA-strands. This can be used for analysis of variable splicing, and is especially well suited for use with exon-array data.

Author: Lasse Folkersen, Diego Diez

Maintainer: Lasse Folkersen <lasse.folkersen at ki.se>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GeneRegionScan")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeneRegionScan")

 

PDF	R Script	GeneRegionScan
PDF		Reference Manual

Details

biocViews	DataImport, Microarray, OneChannel, SNP, Software, Visualization
Version	1.18.0
In Bioconductor since	BioC 2.4 (R-2.9)
License	GPL (>= 2)
Depends	methods, Biobase(>= 2.5.5), Biostrings
Imports	Biobase(>= 2.5.5), affxparser, RColorBrewer, Biostrings
Suggests	BSgenome, affy, AnnotationDbi
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	GeneRegionScan_1.18.0.tar.gz
Windows Binary	GeneRegionScan_1.18.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	GeneRegionScan_1.18.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats