source("http://bioconductor.org/biocLite.R")
biocLite("GeneGA")

GeneGA

Design gene based on both mRNA secondary structure and codon usage bias using Genetic algorithm

Bioconductor version: 2.13

R based Genetic algorithm for gene expression optimization by considering both mRNA secondary structure and codon usage bias, GeneGA includes the information of highly expressed genes of almost 200 genomes. Meanwhile, Vienna RNA Package is needed to ensure GeneGA to function properly.

Author: Zhenpeng Li and Haixiu Huang

Maintainer: Zhenpeng Li <zpli21 at gmail.com>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GeneGA")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeneGA")

 

PDF	R Script	GeneGA
PDF		Reference Manual

Details

biocViews	GeneExpression, Software
Version	1.12.1
In Bioconductor since	BioC 2.7 (R-2.12)
License	GPL version 2
Depends	seqinr, hash, methods
Imports
Suggests
System Requirements
URL	http://www.tbi.univie.ac.at/~ivo/RNA/
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	GeneGA_1.12.1.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard)	GeneGA_1.12.1.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats