source("http://bioconductor.org/biocLite.R")
biocLite("GRENITS")

GRENITS

Gene Regulatory Network Inference Using Time Series

Bioconductor version: 2.13

The package offers four network inference statistical models using Dynamic Bayesian Networks and Gibbs Variable Selection: a linear interaction model, two linear interaction models with added experimental noise (Gaussian and Student distributed) for the case where replicates are available and a non-linear interaction model.

Author: Edward Morrissey

Maintainer: Edward Morrissey <edward.morrissey at gmail.com>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GRENITS")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GRENITS")

 

PDF	R Script	GRENITS
PDF		Reference Manual
Text		NEWS

Details

biocViews	GeneRegulation, GraphsAndNetworks, NetworkInference, Software, TimeCourse
Version	1.14.1
In Bioconductor since	BioC 2.9 (R-2.14)
License	GPL (>= 2)
Depends	R (>= 2.12.0), Rcpp (>= 0.8.6), RcppArmadillo (>= 0.2.8), ggplot2 (>= 0.9.0)
Imports	graphics, grDevices, reshape2, stats, utils
Suggests	network
System Requirements
URL
Depends On Me
Imports Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	GRENITS_1.14.1.tar.gz
Windows Binary	GRENITS_1.14.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	GRENITS_1.14.1.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats