source("http://bioconductor.org/biocLite.R")
biocLite("DiffBind")

DiffBind

Differential Binding Analysis of ChIP-Seq peak data

Bioconductor version: 2.13

Compute differentially bound sites from multiple ChIP-seq experiments using affinity (quantitative) data. Also enables occupancy (overlap) analysis and plotting functions.

Author: Rory Stark<rory.stark at cruk.cam.ac.uk>, Gordon Brown <gordon.brown at cruk.cam.ac.uk>

Maintainer: Rory Stark<rory.stark at cruk.cam.ac.uk>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("DiffBind")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DiffBind")

 

PDF	R Script	DiffBind User's Guide
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, ChIPseq, HighThroughputSequencing, Software
Version	1.8.5
In Bioconductor since	BioC 2.9 (R-2.14)
License	Artistic-2.0
Depends	R (>= 2.15.0), GenomicRanges
Imports	RColorBrewer, amap, edgeR(>= 2.3.58), gplots, grDevices, stats, utils, IRanges, zlibbioc
Suggests	DESeq, Rsamtools, DESeq2
System Requirements
URL
Depends On Me	MMDiff
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	DiffBind_1.8.5.tar.gz
Windows Binary	DiffBind_1.8.5.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	DiffBind_1.8.5.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats