source("http://bioconductor.org/biocLite.R")
biocLite("DECIPHER")

DECIPHER

Database Enabled Code for Ideal Probe Hybridization Employing R

Bioconductor version: 2.13

A toolset that assist in the design of hybridization probes.

Author: Erik Wright

Maintainer: Erik Wright <DECIPHER at cae.wisc.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("DECIPHER")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("DECIPHER")

 

PDF	R Script	Design Group-Specific FISH Probes
PDF	R Script	Design Group-Specific Primers
PDF	R Script	Design Microarray Probes
PDF	R Script	Finding Chimeric Sequences
PDF	R Script	Getting Started DECIPHERing
PDF		Reference Manual

Details

biocViews	Clustering, DataImport, Genetics, Infrastructure, Microarray, QualityControl, Sequencing, Software, Visualization
Version	1.8.0
In Bioconductor since	BioC 2.9 (R-2.14)
License	GPL-3
Depends	R (>= 2.13.0), Biostrings(>= 2.29), RSQLite (>= 0.9), IRanges, stats, XVector, parallel
Imports	Biostrings, parallel, RSQLite, IRanges, stats, XVector
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	DECIPHER_1.8.0.tar.gz
Windows Binary	DECIPHER_1.8.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	DECIPHER_1.8.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats