source("http://bioconductor.org/biocLite.R")
biocLite("CoGAPS")

CoGAPS

Coordinated Gene Activity in Pattern Sets

Bioconductor version: 2.13

Coordinated Gene Activity in Pattern Sets (CoGAPS) infers biological processes which are active in individual gene sets from corresponding microarray measurements. CoGAPS achieves this inference by combining a MCMC matrix decomposition algorithm (GAPS) with a novel statistic inferring activity on gene sets.

Author: Elana J. Fertig

Maintainer: Elana J. Fertig <ejfertig at jhmi.edu>, Michael F. Ochs <mfo at jhu.edu>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("CoGAPS")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CoGAPS")

 

PDF	R Script	GAPS/CoGAPS Users Manual
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, GeneExpression, Microarray, Software
Version	1.12.0
In Bioconductor since	BioC 2.7 (R-2.12)
License	GPL (== 2)
Depends	R (>= 2.9.0), R.utils (>= 1.2.4), gplots (>= 2.8.0)
Imports	graphics, grDevices, methods, stats, utils
Suggests
System Requirements	GAPS-JAGS (==1.0.2)
URL	http://sourceforge.net/p/cogapscpp/wiki/Home/
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	CoGAPS_1.12.0.tar.gz
Windows Binary
Mac OS X 10.6 (Snow Leopard)
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats