source("http://bioconductor.org/biocLite.R")
biocLite("BiGGR")

BiGGR

Creates an interface to the BiGG database, provides a framework for simulation and produces flux graphs

Bioconductor version: 2.13

This package provides an interface to simulate metabolic reconstruction from the BiGG database(http://bigg.ucsd.edu/) and other metabolic reconstruction databases. The package aids in performing flux balance analysis (FBA). Metabolic networks and estimated fluxes can be visualized using hypergraphs.

Author: Anand K. Gavai, Hannes Hettling

Maintainer: Anand K. Gavai <anand.gavai at bioinformatics.nl>, Hannes Hettling <j.hettling at vu.nl>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("BiGGR")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BiGGR")

 

PDF	R Script	BiGGR
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Metabolomics, NetworkAnalysis, Software, Visualization
Version	1.0.0
In Bioconductor since	BioC 2.13 (R-3.0)
License	file LICENSE
Depends	R (>= 2.14.0), rsbml, hyperdraw, LIM
Imports	hypergraph
Suggests
System Requirements
URL	http://www.bioconductor.org/
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	BiGGR_1.0.0.tar.gz
Windows Binary	BiGGR_1.0.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	BiGGR_1.0.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats