source("http://bioconductor.org/biocLite.R")
biocLite("BCRANK")

BCRANK

Predicting binding site consensus from ranked DNA sequences

Bioconductor version: 2.13

Functions and classes for de novo prediction of transcription factor binding consensus by heuristic search

Author: Adam Ameur <Adam.Ameur at genpat.uu.se>

Maintainer: Adam Ameur <Adam.Ameur at genpat.uu.se>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("BCRANK")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BCRANK")

 

PDF	R Script	BCRANK
PDF		BCRANK_intro_fig1.pdf
PDF		BCRANK_intro_fig2.pdf
PDF		Reference Manual

Details

biocViews	GeneRegulation, MotifDiscovery, Software
Version	1.24.0
In Bioconductor since	BioC 2.2 (R-2.7)
License	GPL-2
Depends	methods
Imports	Biostrings
Suggests	seqLogo
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	BCRANK_1.24.0.tar.gz
Windows Binary	BCRANK_1.24.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	BCRANK_1.24.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats