targetscan.Mm.eg.db

TargetScan miRNA target predictions for mouse

Bioconductor version: Release (2.12)

TargetScan miRNA target predictions for mouse assembled using data from the TargetScan website. TargetScan predicts biological targets of miRNAs by searching for the presence of conserved 8mer and 7mer sites that match the seed region of each miRNA. Also identified are sites with mismatches in the seed region that are compensated by conserved 3' pairing. In mammals, predictions are ranked based on the predicted efficacy of targeting as calculated using the context scores of the sites.

Author: Gabor Csardi <Gabor.Csardi at unil.ch>

Maintainer: James F. Reid <james.reid at ifom-ieo-campus.it>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("targetscan.Mm.eg.db")

To cite this package in a publication, start R and enter:

    citation("targetscan.Mm.eg.db")

Documentation


PDF		Reference Manual
Text		LICENSE

Details

biocViews	AnnotationData, FunctionalAnnotation
Version	0.6.1
License	file LICENSE
Depends	R (>= 2.7.0), methods, AnnotationDbi(>= 1.18.3)
Imports	methods, AnnotationDbi
Suggests
System Requirements
URL
Depends On Me
Imports Me
Suggests Me	MmPalateMiRNA

Package Downloads

Package Source	targetscan.Mm.eg.db_0.6.1.tar.gz
Windows Binary	targetscan.Mm.eg.db_0.6.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	targetscan.Mm.eg.db_0.6.1.tgz
Package Downloads Report	Download Stats

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