Affymetrix Human Genome Focus Array annotation data (chip hgfocus)

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Documentation for package ‘hgfocus.db’ version 2.9.0

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hgfocus Bioconductor annotation data package
hgfocus.db Bioconductor annotation data package
hgfocusACCNUM Map Manufacturer identifiers to Accession Numbers
hgfocusALIAS2PROBE Map between Common Gene Symbol Identifiers and Manufacturer Identifiers
hgfocusCHR Map Manufacturer IDs to Chromosomes
hgfocusCHRLENGTHS A named vector for the length of each of the chromosomes
hgfocusCHRLOC Map Manufacturer IDs to Chromosomal Location
hgfocusCHRLOCEND Map Manufacturer IDs to Chromosomal Location
hgfocusENSEMBL Map Ensembl gene accession numbers with Entrez Gene identifiers
hgfocusENSEMBL2PROBE Map Ensembl gene accession numbers with Entrez Gene identifiers
hgfocusENTREZID Map between Manufacturer Identifiers and Entrez Gene
hgfocusENZYME Maps between Manufacturer IDs and Enzyme Commission (EC) Numbers
hgfocusENZYME2PROBE Maps between Manufacturer IDs and Enzyme Commission (EC) Numbers
hgfocusGENENAME Map between Manufacturer IDs and Genes
hgfocusGO Maps between manufacturer IDs and Gene Ontology (GO) IDs
hgfocusGO2ALLPROBES Maps between manufacturer IDs and Gene Ontology (GO) IDs
hgfocusGO2PROBE Maps between manufacturer IDs and Gene Ontology (GO) IDs
hgfocusLOCUSID Map between Manufacturer Identifiers and Entrez Gene
hgfocusMAP Map between Manufacturer Identifiers and cytogenetic maps/bands
hgfocusMAPCOUNTS Number of mapped keys for the maps in package hgfocus.db
hgfocusOMIM Map between Manufacturer Identifiers and Mendelian Inheritance in Man (MIM) identifiers
hgfocusORGANISM The Organism information for hgfocus
hgfocusORGPKG The Organism information for hgfocus
hgfocusPATH Mappings between probe identifiers and KEGG pathway identifiers
hgfocusPATH2PROBE Mappings between probe identifiers and KEGG pathway identifiers
hgfocusPFAM Map Manufacturer IDs to Pfam IDs
hgfocusPMID Maps between Manufacturer Identifiers and PubMed Identifiers
hgfocusPMID2PROBE Maps between Manufacturer Identifiers and PubMed Identifiers
hgfocusPROSITE Map Manufacturer IDs to PROSITE ID
hgfocusREFSEQ Map between Manufacturer Identifiers and RefSeq Identifiers
hgfocusSYMBOL Map between Manufacturer Identifiers and Gene Symbols
hgfocusUNIGENE Map between Manufacturer Identifiers and UniGene cluster identifiers
hgfocusUNIPROT Map Uniprot accession numbers with Entrez Gene identifiers
hgfocusUNIPROT2PROBE Map Uniprot accession numbers with Entrez Gene identifiers
hgfocus_dbconn Collect information about the package annotation DB
hgfocus_dbfile Collect information about the package annotation DB
hgfocus_dbInfo Collect information about the package annotation DB
hgfocus_dbschema Collect information about the package annotation DB