Affymetrix chicken annotation data (chip chicken)

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Documentation for package ‘chicken.db’ version 2.9.0

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chicken Bioconductor annotation data package
chicken.db Bioconductor annotation data package
chickenACCNUM Map Manufacturer identifiers to Accession Numbers
chickenALIAS2PROBE Map between Common Gene Symbol Identifiers and Manufacturer Identifiers
chickenCHR Map Manufacturer IDs to Chromosomes
chickenCHRLENGTHS A named vector for the length of each of the chromosomes
chickenCHRLOC Map Manufacturer IDs to Chromosomal Location
chickenCHRLOCEND Map Manufacturer IDs to Chromosomal Location
chickenENSEMBL Map Ensembl gene accession numbers with Entrez Gene identifiers
chickenENSEMBL2PROBE Map Ensembl gene accession numbers with Entrez Gene identifiers
chickenENTREZID Map between Manufacturer Identifiers and Entrez Gene
chickenENZYME Maps between Manufacturer IDs and Enzyme Commission (EC) Numbers
chickenENZYME2PROBE Maps between Manufacturer IDs and Enzyme Commission (EC) Numbers
chickenGENENAME Map between Manufacturer IDs and Genes
chickenGO Maps between manufacturer IDs and Gene Ontology (GO) IDs
chickenGO2ALLPROBES Maps between manufacturer IDs and Gene Ontology (GO) IDs
chickenGO2PROBE Maps between manufacturer IDs and Gene Ontology (GO) IDs
chickenLOCUSID Map between Manufacturer Identifiers and Entrez Gene
chickenMAPCOUNTS Number of mapped keys for the maps in package chicken.db
chickenORGANISM The Organism information for chicken
chickenORGPKG The Organism information for chicken
chickenPATH Mappings between probe identifiers and KEGG pathway identifiers
chickenPATH2PROBE Mappings between probe identifiers and KEGG pathway identifiers
chickenPFAM Map Manufacturer IDs to Pfam IDs
chickenPMID Maps between Manufacturer Identifiers and PubMed Identifiers
chickenPMID2PROBE Maps between Manufacturer Identifiers and PubMed Identifiers
chickenPROSITE Map Manufacturer IDs to PROSITE ID
chickenREFSEQ Map between Manufacturer Identifiers and RefSeq Identifiers
chickenSYMBOL Map between Manufacturer Identifiers and Gene Symbols
chickenUNIGENE Map between Manufacturer Identifiers and UniGene cluster identifiers
chickenUNIPROT Map Uniprot accession numbers with Entrez Gene identifiers
chickenUNIPROT2PROBE Map Uniprot accession numbers with Entrez Gene identifiers
chicken_dbconn Collect information about the package annotation DB
chicken_dbfile Collect information about the package annotation DB
chicken_dbInfo Collect information about the package annotation DB
chicken_dbschema Collect information about the package annotation DB