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A
asData()
- Method in class org.bioconductor.packages.rservices.
RFactor
Gets the String[] representation of this RFactor.
asData()
- Method in class org.bioconductor.packages.rservices.
RJFactor
Gets the String[] representation of this RJFactor.
C
call(String, Object[], String, String)
- Method in class org.bioconductor.packages.rservices.
RServicesConnection
call(String, Object[])
- Method in class org.bioconductor.packages.rservices.
RServicesEnv
code
- Variable in class org.bioconductor.packages.rservices.
RFactor
code
- Variable in class org.bioconductor.packages.rservices.
RJFactor
colNames
- Variable in class org.bioconductor.packages.rservices.
RJDataFrame
contents
- Variable in class org.bioconductor.packages.rservices.
RUnknown
D
data
- Variable in class org.bioconductor.packages.rservices.
RDataFrame
data
- Variable in class org.bioconductor.packages.rservices.
REnvironment
data
- Variable in class org.bioconductor.packages.rservices.
RJDataFrame
dataRData(String)
- Method in class org.bioconductor.packages.rservices.
RServicesEnv
dataRDataToJavaData(String, String)
- Method in class org.bioconductor.packages.rservices.
TestDataCreater
deepEquals(HashMap, HashMap)
- Static method in class org.bioconductor.packages.rservices.
RJUtil
dim
- Variable in class org.bioconductor.packages.rservices.
RArray
dim
- Variable in class org.bioconductor.packages.rservices.
RJArray
dim
- Variable in class org.bioconductor.packages.rservices.
RJMatrix
dimnames
- Variable in class org.bioconductor.packages.rservices.
RArray
dimnames
- Variable in class org.bioconductor.packages.rservices.
RJArray
dimnames
- Variable in class org.bioconductor.packages.rservices.
RJMatrix
E
e
- Variable in class org.bioconductor.packages.rservices.
RServicesEnv
equals(Object)
- Method in class org.bioconductor.packages.rservices.
FileReference
equals(Object)
- Method in class org.bioconductor.packages.rservices.
FileReferences
equals(Object)
- Method in class org.bioconductor.packages.rservices.
RArray
equals(Object)
- Method in class org.bioconductor.packages.rservices.
RChar
equals(Object)
- Method in class org.bioconductor.packages.rservices.
RComplex
equals(Object)
- Method in class org.bioconductor.packages.rservices.
RDataFrame
equals(Object)
- Method in class org.bioconductor.packages.rservices.
REnvironment
equals(Object)
- Method in class org.bioconductor.packages.rservices.
RFactor
equals(Object)
- Method in class org.bioconductor.packages.rservices.
RFileReferences
equals(Object)
- Method in class org.bioconductor.packages.rservices.
RInteger
equals(Object)
- Method in class org.bioconductor.packages.rservices.
RJCharArray
equals(Object)
- Method in class org.bioconductor.packages.rservices.
RJCharMatrix
equals(Object)
- Method in class org.bioconductor.packages.rservices.
RJComplex
equals(Object)
- Method in class org.bioconductor.packages.rservices.
RJComplexArray
equals(Object)
- Method in class org.bioconductor.packages.rservices.
RJComplexMatrix
equals(Object)
- Method in class org.bioconductor.packages.rservices.
RJDataFrame
equals(Object)
- Method in class org.bioconductor.packages.rservices.
RJFactor
equals(Object)
- Method in class org.bioconductor.packages.rservices.
RJFileReferences
equals(Object)
- Method in class org.bioconductor.packages.rservices.
RJIntegerArray
equals(Object)
- Method in class org.bioconductor.packages.rservices.
RJIntegerMatrix
equals(Object)
- Method in class org.bioconductor.packages.rservices.
RJLogicalArray
equals(Object)
- Method in class org.bioconductor.packages.rservices.
RJLogicalMatrix
equals(Object)
- Method in class org.bioconductor.packages.rservices.
RJNumericArray
equals(Object)
- Method in class org.bioconductor.packages.rservices.
RJNumericMatrix
equals(Object)
- Method in class org.bioconductor.packages.rservices.
RJRawArray
equals(Object)
- Method in class org.bioconductor.packages.rservices.
RJRawMatrix
equals(Object)
- Method in class org.bioconductor.packages.rservices.
RList
equals(Object)
- Method in class org.bioconductor.packages.rservices.
RLogical
equals(Object)
- Method in class org.bioconductor.packages.rservices.
RNumeric
equals(Object)
- Method in class org.bioconductor.packages.rservices.
RRaw
F
FileReference
- Class in
org.bioconductor.packages.rservices
FileReference()
- Constructor for class org.bioconductor.packages.rservices.
FileReference
FileReference(String, String, String)
- Constructor for class org.bioconductor.packages.rservices.
FileReference
FileReferences
- Class in
org.bioconductor.packages.rservices
FileReferences()
- Constructor for class org.bioconductor.packages.rservices.
FileReferences
FileReferences(ArrayList<FileReference>)
- Constructor for class org.bioconductor.packages.rservices.
FileReferences
FileReferences(FileReference[])
- Constructor for class org.bioconductor.packages.rservices.
FileReferences
FileReferences(int)
- Constructor for class org.bioconductor.packages.rservices.
FileReferences
fileReferences
- Variable in class org.bioconductor.packages.rservices.
FileReferences
fileReferences
- Variable in class org.bioconductor.packages.rservices.
RFileReferences
fileReferences
- Variable in class org.bioconductor.packages.rservices.
RJFileReferences
G
getCode()
- Method in class org.bioconductor.packages.rservices.
RFactor
Gets the code value for this RFactor.
getCode()
- Method in class org.bioconductor.packages.rservices.
RJFactor
Gets the code value for this RJFactor.
getColNames()
- Method in class org.bioconductor.packages.rservices.
RJDataFrame
Gets the colNames value for this RJDataFrame.
getContents()
- Method in class org.bioconductor.packages.rservices.
RUnknown
Gets the contents for this RUnknown.
getData()
- Method in class org.bioconductor.packages.rservices.
RDataFrame
Gets the data for this RDataFrame.
getData()
- Method in class org.bioconductor.packages.rservices.
REnvironment
Gets the data for this REnvironment.
getData()
- Method in class org.bioconductor.packages.rservices.
RJDataFrame
Gets the data for this RJDataFrame.
getDim()
- Method in class org.bioconductor.packages.rservices.
RArray
Gets the dim value for this RArray.
getDim()
- Method in class org.bioconductor.packages.rservices.
RJArray
Gets the dimention for this RJArray.
getDim()
- Method in class org.bioconductor.packages.rservices.
RJMatrix
Gets the dimention for this RJMatrix.
getDimnames()
- Method in class org.bioconductor.packages.rservices.
RArray
Gets the dimnames value for this RArray.
getDimnames()
- Method in class org.bioconductor.packages.rservices.
RJArray
Gets the dimnames value for this RJArray.
getDimnames()
- Method in class org.bioconductor.packages.rservices.
RJMatrix
Gets the dimnames value for this RJMatrix.
getFileReferences()
- Method in class org.bioconductor.packages.rservices.
FileReferences
getImaginary()
- Method in class org.bioconductor.packages.rservices.
RComplex
Gets the imaginary for this RComplex.
getImaginary()
- Method in class org.bioconductor.packages.rservices.
RJComplex
Gets the imaginary for this RJComplex.
getIndexNA()
- Method in class org.bioconductor.packages.rservices.
RChar
Gets the NA indices for this RChar.
getIndexNA()
- Method in class org.bioconductor.packages.rservices.
RComplex
Gets the NA indices for this RComplex.
getIndexNA()
- Method in class org.bioconductor.packages.rservices.
RInteger
Gets the NA indices for this RInteger.
getIndexNA()
- Method in class org.bioconductor.packages.rservices.
RLogical
Gets the NA indices for this RLogical.
getIndexNA()
- Method in class org.bioconductor.packages.rservices.
RNumeric
Gets the NA indices for this RInteger.
getLength()
- Method in class org.bioconductor.packages.rservices.
RUnknown
Gets the length of this RUnknown.
getLevels()
- Method in class org.bioconductor.packages.rservices.
RFactor
Gets the levels for this RArray.
getLevels()
- Method in class org.bioconductor.packages.rservices.
RJFactor
Gets the levels for this RArray.
getLocalName()
- Method in class org.bioconductor.packages.rservices.
FileReference
getLocalNames()
- Method in class org.bioconductor.packages.rservices.
RFileReferences
getLocalNames()
- Method in class org.bioconductor.packages.rservices.
RJFileReferences
getNames()
- Method in class org.bioconductor.packages.rservices.
RList
Gets the names for this RList.
getNames()
- Method in class org.bioconductor.packages.rservices.
RVector
Gets the names for this RVector.
getOutputMsg()
- Method in class org.bioconductor.packages.rservices.
RObject
getRclass()
- Method in class org.bioconductor.packages.rservices.
RUnknown
Gets the rclass name for this RUnknown.
getReal()
- Method in class org.bioconductor.packages.rservices.
RComplex
Gets the real for this RComplex.
getReal()
- Method in class org.bioconductor.packages.rservices.
RJComplex
Gets the real for this RJComplex.
getRowNames()
- Method in class org.bioconductor.packages.rservices.
RDataFrame
Gets the rowNames value for this RDataFrame.
getRowNames()
- Method in class org.bioconductor.packages.rservices.
RJDataFrame
Gets the rowNames value for this RJDataFrame.
getType()
- Method in class org.bioconductor.packages.rservices.
FileReference
getTypes()
- Method in class org.bioconductor.packages.rservices.
RFileReferences
getTypes()
- Method in class org.bioconductor.packages.rservices.
RJFileReferences
getUrl()
- Method in class org.bioconductor.packages.rservices.
FileReference
getUrls()
- Method in class org.bioconductor.packages.rservices.
RFileReferences
getUrls()
- Method in class org.bioconductor.packages.rservices.
RJFileReferences
getValue()
- Method in class org.bioconductor.packages.rservices.
RArray
Gets the value for this RArray.
getValue()
- Method in class org.bioconductor.packages.rservices.
RChar
Gets the value for this RChar.
getValue()
- Method in class org.bioconductor.packages.rservices.
RInteger
Gets the value for this RInteger.
getValue()
- Method in class org.bioconductor.packages.rservices.
RJCharArray
Gets the value for this RJCharArray.
getValue()
- Method in class org.bioconductor.packages.rservices.
RJCharMatrix
Gets the value for this RJCharMatrix.
getValue()
- Method in class org.bioconductor.packages.rservices.
RJComplexArray
Gets the value for this RJComplexArray.
getValue()
- Method in class org.bioconductor.packages.rservices.
RJComplexMatrix
Gets the value for this RJComplexMatrix.
getValue()
- Method in class org.bioconductor.packages.rservices.
RJIntegerArray
Gets the value for this RJIntegerArray.
getValue()
- Method in class org.bioconductor.packages.rservices.
RJIntegerMatrix
Gets the value for this RJIntegerMatrix.
getValue()
- Method in class org.bioconductor.packages.rservices.
RJLogicalArray
Gets the value for this RJLogicalArray.
getValue()
- Method in class org.bioconductor.packages.rservices.
RJLogicalMatrix
Gets the value for this RJLogicalMatrix.
getValue()
- Method in class org.bioconductor.packages.rservices.
RJNumericArray
Gets the value for this RJNumericArray.
getValue()
- Method in class org.bioconductor.packages.rservices.
RJNumericMatrix
Gets the value for this RJNumericMatrix.
getValue()
- Method in class org.bioconductor.packages.rservices.
RJRawArray
Gets the value for this RJRawArray.
getValue()
- Method in class org.bioconductor.packages.rservices.
RJRawMatrix
Gets the value for this RJRawMatrix.
getValue()
- Method in class org.bioconductor.packages.rservices.
RList
Gets the value for this RList.
getValue()
- Method in class org.bioconductor.packages.rservices.
RLogical
Gets the value for this RLogical.
getValue()
- Method in class org.bioconductor.packages.rservices.
RNumeric
Gets the value for this RNumeric.
getValue()
- Method in class org.bioconductor.packages.rservices.
RRaw
Gets the value for this RRaw.
H
hashCode()
- Method in class org.bioconductor.packages.rservices.
FileReference
hashCode()
- Method in class org.bioconductor.packages.rservices.
FileReferences
hashCode()
- Method in class org.bioconductor.packages.rservices.
RFileReferences
hashCode()
- Method in class org.bioconductor.packages.rservices.
RJFileReferences
I
imaginary
- Variable in class org.bioconductor.packages.rservices.
RComplex
imaginary
- Variable in class org.bioconductor.packages.rservices.
RJComplex
importCvt(String)
- Method in class org.bioconductor.packages.rservices.
RServicesEnv
indexNA
- Variable in class org.bioconductor.packages.rservices.
RChar
indexNA
- Variable in class org.bioconductor.packages.rservices.
RComplex
indexNA
- Variable in class org.bioconductor.packages.rservices.
RInteger
indexNA
- Variable in class org.bioconductor.packages.rservices.
RLogical
indexNA
- Variable in class org.bioconductor.packages.rservices.
RNumeric
L
length()
- Method in class org.bioconductor.packages.rservices.
RChar
length()
- Method in class org.bioconductor.packages.rservices.
RComplex
length()
- Method in class org.bioconductor.packages.rservices.
RInteger
length()
- Method in class org.bioconductor.packages.rservices.
RJComplex
length()
- Method in class org.bioconductor.packages.rservices.
RLogical
length()
- Method in class org.bioconductor.packages.rservices.
RNumeric
length()
- Method in class org.bioconductor.packages.rservices.
RRaw
length
- Variable in class org.bioconductor.packages.rservices.
RUnknown
length()
- Method in class org.bioconductor.packages.rservices.
RVector
levels
- Variable in class org.bioconductor.packages.rservices.
RFactor
levels
- Variable in class org.bioconductor.packages.rservices.
RJFactor
loadRData(String)
- Method in class org.bioconductor.packages.rservices.
RServicesEnv
loadRDataToJavaData(String)
- Method in class org.bioconductor.packages.rservices.
TestDataCreater
localName
- Variable in class org.bioconductor.packages.rservices.
FileReference
M
mockJava2R(Object, String, String)
- Method in class org.bioconductor.packages.rservices.
MockService
mockR2Java(String, String)
- Method in class org.bioconductor.packages.rservices.
MockService
MockService
- Class in
org.bioconductor.packages.rservices
MockService(RServicesEnv)
- Constructor for class org.bioconductor.packages.rservices.
MockService
N
names
- Variable in class org.bioconductor.packages.rservices.
RList
names
- Variable in class org.bioconductor.packages.rservices.
RVector
O
org.bioconductor.packages.rservices
- package org.bioconductor.packages.rservices
P
put(String, RObject)
- Method in class org.bioconductor.packages.rservices.
REnvironment
R
RArray
- Class in
org.bioconductor.packages.rservices
RArray()
- Constructor for class org.bioconductor.packages.rservices.
RArray
RArray(RVector)
- Constructor for class org.bioconductor.packages.rservices.
RArray
RArray(RVector, int[], RList)
- Constructor for class org.bioconductor.packages.rservices.
RArray
RChar
- Class in
org.bioconductor.packages.rservices
RChar()
- Constructor for class org.bioconductor.packages.rservices.
RChar
RChar(String)
- Constructor for class org.bioconductor.packages.rservices.
RChar
RChar(String[])
- Constructor for class org.bioconductor.packages.rservices.
RChar
RChar(String[], int[], String[])
- Constructor for class org.bioconductor.packages.rservices.
RChar
rclass
- Variable in class org.bioconductor.packages.rservices.
RUnknown
RComplex
- Class in
org.bioconductor.packages.rservices
RComplex()
- Constructor for class org.bioconductor.packages.rservices.
RComplex
RComplex(double[], double[], int[], String[])
- Constructor for class org.bioconductor.packages.rservices.
RComplex
RDataFrame
- Class in
org.bioconductor.packages.rservices
RDataFrame()
- Constructor for class org.bioconductor.packages.rservices.
RDataFrame
RDataFrame(RList, String[])
- Constructor for class org.bioconductor.packages.rservices.
RDataFrame
real
- Variable in class org.bioconductor.packages.rservices.
RComplex
real
- Variable in class org.bioconductor.packages.rservices.
RJComplex
REnvironment
- Class in
org.bioconductor.packages.rservices
REnvironment()
- Constructor for class org.bioconductor.packages.rservices.
REnvironment
RFactor
- Class in
org.bioconductor.packages.rservices
RFactor()
- Constructor for class org.bioconductor.packages.rservices.
RFactor
RFactor(String[], int[])
- Constructor for class org.bioconductor.packages.rservices.
RFactor
RFileReferences
- Class in
org.bioconductor.packages.rservices
RFileReferences()
- Constructor for class org.bioconductor.packages.rservices.
RFileReferences
RFileReferences(FileReferences)
- Constructor for class org.bioconductor.packages.rservices.
RFileReferences
RFileReferences(RChar, RChar, RChar)
- Constructor for class org.bioconductor.packages.rservices.
RFileReferences
RInteger
- Class in
org.bioconductor.packages.rservices
RInteger()
- Constructor for class org.bioconductor.packages.rservices.
RInteger
RInteger(int)
- Constructor for class org.bioconductor.packages.rservices.
RInteger
RInteger(int[])
- Constructor for class org.bioconductor.packages.rservices.
RInteger
RInteger(int[], int[], String[])
- Constructor for class org.bioconductor.packages.rservices.
RInteger
RJArray
- Class in
org.bioconductor.packages.rservices
RJArray()
- Constructor for class org.bioconductor.packages.rservices.
RJArray
RJCharArray
- Class in
org.bioconductor.packages.rservices
RJCharArray()
- Constructor for class org.bioconductor.packages.rservices.
RJCharArray
RJCharArray(String[], int[], Object[])
- Constructor for class org.bioconductor.packages.rservices.
RJCharArray
RJCharMatrix
- Class in
org.bioconductor.packages.rservices
RJCharMatrix()
- Constructor for class org.bioconductor.packages.rservices.
RJCharMatrix
RJCharMatrix(String[], int[], Object[])
- Constructor for class org.bioconductor.packages.rservices.
RJCharMatrix
RJComplex
- Class in
org.bioconductor.packages.rservices
RJComplex()
- Constructor for class org.bioconductor.packages.rservices.
RJComplex
RJComplex(double[], double[])
- Constructor for class org.bioconductor.packages.rservices.
RJComplex
RJComplexArray
- Class in
org.bioconductor.packages.rservices
RJComplexArray()
- Constructor for class org.bioconductor.packages.rservices.
RJComplexArray
RJComplexArray(RJComplex, int[], Object[])
- Constructor for class org.bioconductor.packages.rservices.
RJComplexArray
RJComplexMatrix
- Class in
org.bioconductor.packages.rservices
RJComplexMatrix()
- Constructor for class org.bioconductor.packages.rservices.
RJComplexMatrix
RJComplexMatrix(RJComplex, int[], Object[])
- Constructor for class org.bioconductor.packages.rservices.
RJComplexMatrix
RJDataFrame
- Class in
org.bioconductor.packages.rservices
RJDataFrame()
- Constructor for class org.bioconductor.packages.rservices.
RJDataFrame
RJDataFrame(Object[], String[], String[])
- Constructor for class org.bioconductor.packages.rservices.
RJDataFrame
RJFactor
- Class in
org.bioconductor.packages.rservices
RJFactor()
- Constructor for class org.bioconductor.packages.rservices.
RJFactor
RJFactor(String[], int[])
- Constructor for class org.bioconductor.packages.rservices.
RJFactor
RJFileReferences
- Class in
org.bioconductor.packages.rservices
RJFileReferences()
- Constructor for class org.bioconductor.packages.rservices.
RJFileReferences
RJFileReferences(FileReferences)
- Constructor for class org.bioconductor.packages.rservices.
RJFileReferences
RJFileReferences(String[], String[], String[])
- Constructor for class org.bioconductor.packages.rservices.
RJFileReferences
RJIntegerArray
- Class in
org.bioconductor.packages.rservices
RJIntegerArray()
- Constructor for class org.bioconductor.packages.rservices.
RJIntegerArray
RJIntegerArray(int[], int[], Object[])
- Constructor for class org.bioconductor.packages.rservices.
RJIntegerArray
RJIntegerMatrix
- Class in
org.bioconductor.packages.rservices
RJIntegerMatrix()
- Constructor for class org.bioconductor.packages.rservices.
RJIntegerMatrix
RJIntegerMatrix(int[], int[], Object[])
- Constructor for class org.bioconductor.packages.rservices.
RJIntegerMatrix
RJLogicalArray
- Class in
org.bioconductor.packages.rservices
RJLogicalArray()
- Constructor for class org.bioconductor.packages.rservices.
RJLogicalArray
RJLogicalArray(boolean[], int[], Object[])
- Constructor for class org.bioconductor.packages.rservices.
RJLogicalArray
RJLogicalMatrix
- Class in
org.bioconductor.packages.rservices
RJLogicalMatrix()
- Constructor for class org.bioconductor.packages.rservices.
RJLogicalMatrix
RJLogicalMatrix(boolean[], int[], Object[])
- Constructor for class org.bioconductor.packages.rservices.
RJLogicalMatrix
RJMatrix
- Class in
org.bioconductor.packages.rservices
RJMatrix()
- Constructor for class org.bioconductor.packages.rservices.
RJMatrix
RJNumericArray
- Class in
org.bioconductor.packages.rservices
RJNumericArray()
- Constructor for class org.bioconductor.packages.rservices.
RJNumericArray
RJNumericArray(double[], int[], Object[])
- Constructor for class org.bioconductor.packages.rservices.
RJNumericArray
RJNumericMatrix
- Class in
org.bioconductor.packages.rservices
RJNumericMatrix()
- Constructor for class org.bioconductor.packages.rservices.
RJNumericMatrix
RJNumericMatrix(double[], int[], Object[])
- Constructor for class org.bioconductor.packages.rservices.
RJNumericMatrix
RJRawArray
- Class in
org.bioconductor.packages.rservices
RJRawArray()
- Constructor for class org.bioconductor.packages.rservices.
RJRawArray
RJRawArray(byte[], int[], Object[])
- Constructor for class org.bioconductor.packages.rservices.
RJRawArray
RJRawMatrix
- Class in
org.bioconductor.packages.rservices
RJRawMatrix()
- Constructor for class org.bioconductor.packages.rservices.
RJRawMatrix
RJRawMatrix(byte[], int[], Object[])
- Constructor for class org.bioconductor.packages.rservices.
RJRawMatrix
RJUtil
- Class in
org.bioconductor.packages.rservices
RJUtil()
- Constructor for class org.bioconductor.packages.rservices.
RJUtil
RList
- Class in
org.bioconductor.packages.rservices
RList()
- Constructor for class org.bioconductor.packages.rservices.
RList
RList(Object[], String[])
- Constructor for class org.bioconductor.packages.rservices.
RList
RLogical
- Class in
org.bioconductor.packages.rservices
RLogical()
- Constructor for class org.bioconductor.packages.rservices.
RLogical
RLogical(boolean)
- Constructor for class org.bioconductor.packages.rservices.
RLogical
RLogical(boolean[], int[], String[])
- Constructor for class org.bioconductor.packages.rservices.
RLogical
rm(String)
- Method in class org.bioconductor.packages.rservices.
RServicesEnv
RMatrix
- Class in
org.bioconductor.packages.rservices
RMatrix()
- Constructor for class org.bioconductor.packages.rservices.
RMatrix
rmDataLoaderEnv()
- Method in class org.bioconductor.packages.rservices.
RServicesEnv
RNumeric
- Class in
org.bioconductor.packages.rservices
RNumeric()
- Constructor for class org.bioconductor.packages.rservices.
RNumeric
RNumeric(double)
- Constructor for class org.bioconductor.packages.rservices.
RNumeric
RNumeric(double[])
- Constructor for class org.bioconductor.packages.rservices.
RNumeric
RNumeric(double[], int[], String[])
- Constructor for class org.bioconductor.packages.rservices.
RNumeric
RObject
- Class in
org.bioconductor.packages.rservices
RObject()
- Constructor for class org.bioconductor.packages.rservices.
RObject
rowNames
- Variable in class org.bioconductor.packages.rservices.
RDataFrame
rowNames
- Variable in class org.bioconductor.packages.rservices.
RJDataFrame
RRaw
- Class in
org.bioconductor.packages.rservices
RRaw()
- Constructor for class org.bioconductor.packages.rservices.
RRaw
RRaw(byte[], String[])
- Constructor for class org.bioconductor.packages.rservices.
RRaw
RServicesConnection
- Class in
org.bioconductor.packages.rservices
RServicesConnection(Connection, String, long)
- Constructor for class org.bioconductor.packages.rservices.
RServicesConnection
RServicesEnv
- Class in
org.bioconductor.packages.rservices
RServicesEnv()
- Constructor for class org.bioconductor.packages.rservices.
RServicesEnv
RUnknown
- Class in
org.bioconductor.packages.rservices
RUnknown()
- Constructor for class org.bioconductor.packages.rservices.
RUnknown
RVector
- Class in
org.bioconductor.packages.rservices
RVector()
- Constructor for class org.bioconductor.packages.rservices.
RVector
RVector(String[])
- Constructor for class org.bioconductor.packages.rservices.
RVector
S
setCode(int[])
- Method in class org.bioconductor.packages.rservices.
RFactor
Sets the code for this RFactor.
setCode(Integer)
- Method in class org.bioconductor.packages.rservices.
RFactor
Sets the code for this RFactor.
setCode(int[])
- Method in class org.bioconductor.packages.rservices.
RJFactor
Sets the code for this RJFactor.
setCode(Integer)
- Method in class org.bioconductor.packages.rservices.
RJFactor
Sets the code for this RJFactor.
setColNames(String[])
- Method in class org.bioconductor.packages.rservices.
RJDataFrame
Sets the colNames for this RJDataFrame.
setColNames(String)
- Method in class org.bioconductor.packages.rservices.
RJDataFrame
Sets the colNames for this RJDataFrame.
setContents(String)
- Method in class org.bioconductor.packages.rservices.
RUnknown
Sets the contents for this RUnknown.
setData(RList)
- Method in class org.bioconductor.packages.rservices.
RDataFrame
Sets the data for this RDataFrame.
setData(HashMap<String, RObject>)
- Method in class org.bioconductor.packages.rservices.
REnvironment
Sets the data for this REnvironment.
setData(Object[])
- Method in class org.bioconductor.packages.rservices.
RJDataFrame
Sets the data for this RJDataFrame.
setDataLoaderEnv()
- Method in class org.bioconductor.packages.rservices.
RServicesEnv
setDim(int[])
- Method in class org.bioconductor.packages.rservices.
RArray
Sets the dim value for this RArray.
setDim(int[])
- Method in class org.bioconductor.packages.rservices.
RJArray
Sets the dimention for this RJArray.
setDim(int[])
- Method in class org.bioconductor.packages.rservices.
RJMatrix
Sets the dimention for this RJMatrix.
setDimnames(RList)
- Method in class org.bioconductor.packages.rservices.
RArray
Sets the dimnames value for this RArray.
setDimnames(Object[])
- Method in class org.bioconductor.packages.rservices.
RJArray
Sets the dimnames value for this RJArray.
setDimnames(Object[])
- Method in class org.bioconductor.packages.rservices.
RJMatrix
Sets the dimnames value for this RJMatrix.
setFileReferences(ArrayList<FileReference>)
- Method in class org.bioconductor.packages.rservices.
FileReferences
setImaginary(double[])
- Method in class org.bioconductor.packages.rservices.
RComplex
Sets the imaginary for this RComplex.
setImaginary(Double)
- Method in class org.bioconductor.packages.rservices.
RComplex
Sets the imaginary for this RComplex.
setImaginary(double[])
- Method in class org.bioconductor.packages.rservices.
RJComplex
Sets the imaginary for this RJComplex.
setImaginary(Double)
- Method in class org.bioconductor.packages.rservices.
RJComplex
Sets the imaginary for this RJComplex.
setIndexNA(int[])
- Method in class org.bioconductor.packages.rservices.
RChar
Sets the NA indices for this RChar, start from 0
setIndexNA(int[])
- Method in class org.bioconductor.packages.rservices.
RComplex
Sets the NA indices for this RComplex, start from 0
setIndexNA(int[])
- Method in class org.bioconductor.packages.rservices.
RInteger
Sets the NA indices for this RInteger, start from 0
setIndexNA(int[])
- Method in class org.bioconductor.packages.rservices.
RLogical
Sets the NA indices for this RLogical, start from 0
setIndexNA(int[])
- Method in class org.bioconductor.packages.rservices.
RNumeric
Sets the NA indices for this RInteger, start from 0
setLength(int)
- Method in class org.bioconductor.packages.rservices.
RUnknown
Sets the length for this RUnknown.
setLevels(String[])
- Method in class org.bioconductor.packages.rservices.
RFactor
Sets the levels for this RFactor.
setLevels(String)
- Method in class org.bioconductor.packages.rservices.
RFactor
Sets the levels for this RFactor.
setLevels(String[])
- Method in class org.bioconductor.packages.rservices.
RJFactor
Sets the levels for this RJFactor.
setLevels(String)
- Method in class org.bioconductor.packages.rservices.
RJFactor
Sets the levels for this RJFactor.
setLocalName(String)
- Method in class org.bioconductor.packages.rservices.
FileReference
setLocalNames(RChar)
- Method in class org.bioconductor.packages.rservices.
RFileReferences
setLocalNames(String[])
- Method in class org.bioconductor.packages.rservices.
RJFileReferences
setNames(String[])
- Method in class org.bioconductor.packages.rservices.
RList
Sets the names for this RList.
setNames(String)
- Method in class org.bioconductor.packages.rservices.
RList
Sets the names for this RList.
setNames(String[])
- Method in class org.bioconductor.packages.rservices.
RVector
Sets the names for this RVector.
setOutputMsg(String)
- Method in class org.bioconductor.packages.rservices.
RObject
setRclass(String)
- Method in class org.bioconductor.packages.rservices.
RUnknown
Sets the rclass name for this RUnknown.
setReal(double[])
- Method in class org.bioconductor.packages.rservices.
RComplex
Sets the real for this RComplex.
setReal(Double)
- Method in class org.bioconductor.packages.rservices.
RComplex
Sets the real for this RComplex.
setReal(double[])
- Method in class org.bioconductor.packages.rservices.
RJComplex
Sets the real for this RJComplex.
setReal(Double)
- Method in class org.bioconductor.packages.rservices.
RJComplex
Sets the real for this RJComplex.
setRowNames(String[])
- Method in class org.bioconductor.packages.rservices.
RDataFrame
Sets the rowNames for this RDataFrame.
setRowNames(String)
- Method in class org.bioconductor.packages.rservices.
RDataFrame
Sets the rowNames for this RDataFrame.
setRowNames(String[])
- Method in class org.bioconductor.packages.rservices.
RJDataFrame
Sets the rowNames for this RJDataFrame.
setRowNames(String)
- Method in class org.bioconductor.packages.rservices.
RJDataFrame
Sets the rowNames for this RJDataFrame.
setType(String)
- Method in class org.bioconductor.packages.rservices.
FileReference
setTypes(RChar)
- Method in class org.bioconductor.packages.rservices.
RFileReferences
setTypes(String[])
- Method in class org.bioconductor.packages.rservices.
RJFileReferences
setUrl(String)
- Method in class org.bioconductor.packages.rservices.
FileReference
setUrls(RChar)
- Method in class org.bioconductor.packages.rservices.
RFileReferences
setUrls(String[])
- Method in class org.bioconductor.packages.rservices.
RJFileReferences
setValue(RVector)
- Method in class org.bioconductor.packages.rservices.
RArray
Sets the value for this RArray.
setValue(String[])
- Method in class org.bioconductor.packages.rservices.
RChar
Sets the value for this RChar.
setValue(String)
- Method in class org.bioconductor.packages.rservices.
RChar
Sets the value for this RChar.
setValue(int[])
- Method in class org.bioconductor.packages.rservices.
RInteger
Sets the value for this RInteger.
setValue(Integer)
- Method in class org.bioconductor.packages.rservices.
RInteger
Sets the value for this RInteger.
setValue(String[])
- Method in class org.bioconductor.packages.rservices.
RJCharArray
Sets the value for this RJCharArray.
setValue(String[])
- Method in class org.bioconductor.packages.rservices.
RJCharMatrix
Sets the value for this RJCharMatrix.
setValue(RJComplex)
- Method in class org.bioconductor.packages.rservices.
RJComplexArray
Sets the value for this RJComplexArray.
setValue(RJComplex)
- Method in class org.bioconductor.packages.rservices.
RJComplexMatrix
Sets the value for this RJComplexMatrix.
setValue(int[])
- Method in class org.bioconductor.packages.rservices.
RJIntegerArray
Sets the value for this RJIntegerArray.
setValue(int[])
- Method in class org.bioconductor.packages.rservices.
RJIntegerMatrix
Sets the value for this RJIntegerMatrix.
setValue(boolean[])
- Method in class org.bioconductor.packages.rservices.
RJLogicalArray
Sets the value for this RJLogicalArray.
setValue(boolean[])
- Method in class org.bioconductor.packages.rservices.
RJLogicalMatrix
Sets the value for this RJLogicalMatrix.
setValue(double[])
- Method in class org.bioconductor.packages.rservices.
RJNumericArray
Sets the value for this RJNumericArray.
setValue(double[])
- Method in class org.bioconductor.packages.rservices.
RJNumericMatrix
Sets the value for this RJNumericMatrix.
setValue(byte[])
- Method in class org.bioconductor.packages.rservices.
RJRawArray
Sets the value for this RJRawArray.
setValue(byte[])
- Method in class org.bioconductor.packages.rservices.
RJRawMatrix
Sets the value for this RJRawMatrix.
setValue(Object[])
- Method in class org.bioconductor.packages.rservices.
RList
Sets the value for this RList.
setValue(boolean[])
- Method in class org.bioconductor.packages.rservices.
RLogical
Sets the value for this RLogical.
setValue(Boolean)
- Method in class org.bioconductor.packages.rservices.
RLogical
Sets the value for this RLogical.
setValue(double[])
- Method in class org.bioconductor.packages.rservices.
RNumeric
Sets the value for this RNumeric.
setValue(Double)
- Method in class org.bioconductor.packages.rservices.
RNumeric
Sets the value for this RNumeric.
setValue(byte[])
- Method in class org.bioconductor.packages.rservices.
RRaw
Sets the value for this RRaw.
setValue(Byte)
- Method in class org.bioconductor.packages.rservices.
RRaw
Sets the value for this RRaw.
size()
- Method in class org.bioconductor.packages.rservices.
FileReferences
size()
- Method in class org.bioconductor.packages.rservices.
RFileReferences
source(String)
- Method in class org.bioconductor.packages.rservices.
RServicesEnv
T
TestDataCreater
- Class in
org.bioconductor.packages.rservices
TestDataCreater(RServicesEnv)
- Constructor for class org.bioconductor.packages.rservices.
TestDataCreater
toString()
- Method in class org.bioconductor.packages.rservices.
RArray
toString()
- Method in class org.bioconductor.packages.rservices.
RChar
toString()
- Method in class org.bioconductor.packages.rservices.
RComplex
toString()
- Method in class org.bioconductor.packages.rservices.
RDataFrame
toString()
- Method in class org.bioconductor.packages.rservices.
REnvironment
toString()
- Method in class org.bioconductor.packages.rservices.
RFactor
toString()
- Method in class org.bioconductor.packages.rservices.
RInteger
toString()
- Method in class org.bioconductor.packages.rservices.
RJCharArray
toString()
- Method in class org.bioconductor.packages.rservices.
RJCharMatrix
toString()
- Method in class org.bioconductor.packages.rservices.
RJComplex
toString()
- Method in class org.bioconductor.packages.rservices.
RJComplexArray
toString()
- Method in class org.bioconductor.packages.rservices.
RJComplexMatrix
toString()
- Method in class org.bioconductor.packages.rservices.
RJDataFrame
toString()
- Method in class org.bioconductor.packages.rservices.
RJFactor
toString()
- Method in class org.bioconductor.packages.rservices.
RJIntegerArray
toString()
- Method in class org.bioconductor.packages.rservices.
RJIntegerMatrix
toString()
- Method in class org.bioconductor.packages.rservices.
RJLogicalArray
toString()
- Method in class org.bioconductor.packages.rservices.
RJLogicalMatrix
toString()
- Method in class org.bioconductor.packages.rservices.
RJNumericArray
toString()
- Method in class org.bioconductor.packages.rservices.
RJNumericMatrix
toString()
- Method in class org.bioconductor.packages.rservices.
RJRawArray
toString()
- Method in class org.bioconductor.packages.rservices.
RJRawMatrix
toString()
- Method in class org.bioconductor.packages.rservices.
RList
toString()
- Method in class org.bioconductor.packages.rservices.
RLogical
toString()
- Method in class org.bioconductor.packages.rservices.
RNumeric
toString()
- Method in class org.bioconductor.packages.rservices.
RRaw
toString()
- Method in class org.bioconductor.packages.rservices.
RUnknown
type
- Variable in class org.bioconductor.packages.rservices.
FileReference
U
url
- Variable in class org.bioconductor.packages.rservices.
FileReference
V
value
- Variable in class org.bioconductor.packages.rservices.
RArray
value
- Variable in class org.bioconductor.packages.rservices.
RChar
value
- Variable in class org.bioconductor.packages.rservices.
RInteger
value
- Variable in class org.bioconductor.packages.rservices.
RJCharArray
value
- Variable in class org.bioconductor.packages.rservices.
RJCharMatrix
value
- Variable in class org.bioconductor.packages.rservices.
RJComplexArray
value
- Variable in class org.bioconductor.packages.rservices.
RJComplexMatrix
value
- Variable in class org.bioconductor.packages.rservices.
RJIntegerArray
value
- Variable in class org.bioconductor.packages.rservices.
RJIntegerMatrix
value
- Variable in class org.bioconductor.packages.rservices.
RJLogicalArray
value
- Variable in class org.bioconductor.packages.rservices.
RJLogicalMatrix
value
- Variable in class org.bioconductor.packages.rservices.
RJNumericArray
value
- Variable in class org.bioconductor.packages.rservices.
RJNumericMatrix
value
- Variable in class org.bioconductor.packages.rservices.
RJRawArray
value
- Variable in class org.bioconductor.packages.rservices.
RJRawMatrix
value
- Variable in class org.bioconductor.packages.rservices.
RList
value
- Variable in class org.bioconductor.packages.rservices.
RLogical
value
- Variable in class org.bioconductor.packages.rservices.
RNumeric
value
- Variable in class org.bioconductor.packages.rservices.
RRaw
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