triform

Triform finds enriched regions (peaks) in transcription factor ChIP-sequencing data

Bioconductor version: Release (2.12)

The Triform algorithm uses model-free statistics to identify peak-like distributions of TF ChIP sequencing reads, taking advantage of an improved peak definition in combination with known profile characteristics.

Author: Karl Kornacker Developer [aut], Tony Håndstad Developer [aut, cre]

Maintainer: Tony Håndstad Developer <tony.handstad at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("triform")

To cite this package in a publication, start R and enter:

    citation("triform")

Documentation

PDF	R Script	Triform users guide
PDF		Reference Manual

Details

biocViews	ChIPseq, Sequencing, Software
Version	1.2.0
In Bioconductor since	BioC 2.11 (R-2.16)
License	GPL-2
Depends	R (>= 2.11.0), IRanges, yaml
Imports	IRanges, yaml, BiocGenerics
Suggests	RUnit
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source	triform_1.2.0.tar.gz
Windows Binary	triform_1.2.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	triform_1.2.0.tgz
Package Downloads Report	Download Stats

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