snapCGH

Segmentation, normalisation and processing of aCGH data.

Bioconductor version: Release (2.12)

Methods for segmenting, normalising and processing aCGH data; including plotting functions for visualising raw and segmented data for individual and multiple arrays.

Author: Mike L. Smith, John C. Marioni, Steven McKinney, Thomas Hardcastle, Natalie P. Thorne

Maintainer: John Marioni <marioni at uchicago.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("snapCGH")

To cite this package in a publication, start R and enter:

    citation("snapCGH")

Documentation

PDF	R Script	Segmentation Overview
PDF		Reference Manual

Details

biocViews	CopyNumberVariants, Microarray, Preprocessing, Software, TwoChannel
Version	1.30.0
In Bioconductor since	BioC 1.8 (R-1.13)
License	GPL
Depends	limma, DNAcopy, methods
Imports	aCGH, cluster, DNAcopy, GLAD, graphics, grDevices, limma, methods, stats, tilingArray, utils
Suggests
System Requirements
URL
Depends On Me	ADaCGH2
Imports Me
Suggests Me	beadarraySNP

Package Downloads

Package Source	snapCGH_1.30.0.tar.gz
Windows Binary	snapCGH_1.30.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	snapCGH_1.30.0.tgz
Package Downloads Report	Download Stats

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