mosaics

MOSAiCS (MOdel-based one and two Sample Analysis and Inference for ChIP-Seq)

Bioconductor version: Release (2.12)

This package provides functions for fitting MOSAiCS, a statistical framework to analyze one-sample or two-sample ChIP-seq data.

Author: Dongjun Chung, Pei Fen Kuan, Sunduz Keles

Maintainer: Dongjun Chung <chungdon at stat.wisc.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("mosaics")

To cite this package in a publication, start R and enter:

    citation("mosaics")

Documentation

PDF Figure4a.pdf
PDF Figure4b.pdf
PDF Figure5a.pdf
PDF Figure5b.pdf
PDF Figure5c.pdf
PDF Figure5d.pdf
PDF GOF_matchLow.pdf
PDF GOF_rMOM.pdf
PDF R Script MOSAiCS
PDF   Reference Manual
Text   NEWS

Details

biocViews Bioinformatics, ChIPseq, Genetics, Sequencing, Software, Transcription
Version 1.8.0
In Bioconductor since BioC 2.8 (R-2.13)
License GPL (>= 2)
Depends R (>= 2.11.1), methods, graphics, Rcpp
Imports MASS, splines, lattice, IRanges
Suggests mosaicsExample
System Requirements Perl
URL http://groups.google.com/group/mosaics_user_group
Depends On Me jmosaics
Imports Me
Suggests Me

Package Downloads

Package Source mosaics_1.8.0.tar.gz
Windows Binary mosaics_1.8.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) mosaics_1.8.0.tgz
Package Downloads Report Download Stats

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