matchBox

Utilities to compute, compare, and plot the agreement between ordered vectors of features (ie. distinct genomic experiments). The package includes Correspondence-At-the-TOP (CAT) analysis.

Bioconductor version: Release (2.12)

The matchBox package enables comparing ranked vectors of features, merging multiple datasets, removing redundant features, using CAT-plots and Venn diagrams, and computing statistical significance.

Author: Luigi Marchionni <marchion at jhu.edu>, Anuj Gupta <Anuj Gupta <agupta52 at jhu.edu>

Maintainer: Luigi Marchionni <marchion at jhu.edu>, Anuj Gupta <Anuj Gupta <agupta52 at jhu.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("matchBox")

To cite this package in a publication, start R and enter:

    citation("matchBox")

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