iChip

Bayesian Modeling of ChIP-chip Data Through Hidden Ising Models

Bioconductor version: Release (2.12)

This package uses hidden Ising models to identify enriched genomic regions in ChIP-chip data. It can be used to analyze the data from multiple platforms (e.g., Affymetrix, Agilent, and NimbleGen), and the data with single to multiple replicates.

Author: Qianxing Mo

Maintainer: Qianxing Mo <qmo at bcm.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("iChip")

To cite this package in a publication, start R and enter:

    citation("iChip")

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