biovizBase

Basic graphic utilities for visualization of genomic data.

Bioconductor version: Release (2.12)

The biovizBase package is designed to provide a set of utilities, color schemes and conventions for genomic data. It serves as the base for various high-level packages for biological data visualization. This saves development effort and encourages consistency.

Author: Tengfei Yin, Michael Lawrence, Dianne Cook

Maintainer: Tengfei Yin <yintengfei at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("biovizBase")

To cite this package in a publication, start R and enter:

    citation("biovizBase")

Documentation

PDF	R Script	An Introduction to biovizBase
PDF		intro-shrink-single.pdf
PDF		intro-shrinkageFun.pdf
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, Infrastructure, Preprocessing, Software, Visualization
Version	1.8.1
In Bioconductor since	BioC 2.9 (R-2.14)
License	Artistic-2.0
Depends	R (>= 2.10), methods
Imports	methods, grDevices, stats, scales, Hmisc, RColorBrewer, dichromat, BiocGenerics, IRanges, GenomicRanges, Biostrings, Rsamtools, GenomicFeatures
Suggests	BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene, BSgenome, rtracklayer
System Requirements
URL
Depends On Me	qrqc
Imports Me	Gviz, qrqc
Suggests Me

Package Downloads

Package Source	biovizBase_1.8.1.tar.gz
Windows Binary	biovizBase_1.8.1.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	biovizBase_1.8.1.tgz
Package Downloads Report	Download Stats

Workflows »

Common Bioconductor workflows include:

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Hosting provided by Fred Hutchinson Cancer Research Center