Tools for Working with Genetic Variants

Bioconductor version: Release (2.12)

Tools for detecting, filtering, calling, comparing and plotting variants.

Author: Michael Lawrence, Jeremiah Degenhardt, Robert Gentleman

Maintainer: Michael Lawrence <michafla at>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script Introduction to VariantTools
PDF   Reference Manual
Text   NEWS


biocViews GeneticVariability, Genetics, HighThroughputSequencing, Software
Version 1.2.2
License Artistic-2.0
Depends IRanges(>= 1.17.10), GenomicRanges(>= 1.9.52), VariantAnnotation(>= 1.3.20), methods
Imports IRanges, Rsamtools(>= 1.11.10), GenomicRanges, BiocGenerics, Biostrings, parallel, gmapR(>= 1.1.16), GenomicFeatures, VariantAnnotation, methods, RBGL, graph, Matrix, rtracklayer
Suggests RUnit, LungCancerLines(>= 0.0.6)
System Requirements
Depends On Me
Imports Me HTSeqGenie
Suggests Me

Package Downloads

Package Source VariantTools_1.2.2.tar.gz
Windows Binary
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