ExpressionView

Visualize biclusters identified in gene expression data

Bioconductor version: Release (2.12)

ExpressionView visualizes possibly overlapping biclusters in a gene expression matrix. It can use the result of the ISA method (eisa package) or the algorithms in the biclust package or others. The viewer itself was developed using Adobe Flex and runs in a flash-enabled web browser.

Author: Andreas Luscher <andreas.luescher at a3.epfl.ch>

Maintainer: Gabor Csardi <csardi.gabor at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ExpressionView")

To cite this package in a publication, start R and enter:

    citation("ExpressionView")

Documentation

PDF	R Script	ExpressionView
PDF	R Script	ExpressionView file format
PDF	R Script	How the ordering algorithm works
PDF		Reference Manual

Details

biocViews	Classification, GeneExpression, Microarray, Software, Visualization
Version	1.12.0
In Bioconductor since	BioC 2.6 (R-2.11)
License	GPL (>= 2)
Depends	caTools, bitops, methods, isa2, eisa, GO.db, KEGG.db, AnnotationDbi
Imports	methods, isa2, eisa, GO.db, KEGG.db, AnnotationDbi
Suggests	ALL, hgu95av2.db, biclust, affy
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source	ExpressionView_1.12.0.tar.gz
Windows Binary	ExpressionView_1.12.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	ExpressionView_1.12.0.tgz
Package Downloads Report	Download Stats

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