DBChIP
Differential Binding of Transcription Factor with ChIP-seq
Bioconductor version: Release (2.12)
DBChIP detects differentially bound sharp binding sites across multiple conditions, with or without matching control samples.
Author: Kun Liang
Maintainer: Kun Liang <kliang at stat.wisc.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("DBChIP")
To cite this package in a publication, start R and enter:
citation("DBChIP")
Documentation
| R Script | DBChIP | |
| Reference Manual |
Details
| biocViews | Bioinformatics, ChIPseq, Genetics, Sequencing, Software, Transcription |
| Version | 1.4.0 |
| In Bioconductor since | BioC 2.11 (R-2.16) |
| License | GPL (>= 2) |
| Depends | R (>= 2.15.0), edgeR, DESeq |
| Imports | |
| Suggests | ShortRead, BiocGenerics |
| System Requirements | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me |
Package Downloads
| Package Source | DBChIP_1.4.0.tar.gz |
| Windows Binary | DBChIP_1.4.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | DBChIP_1.4.0.tgz |
| Package Downloads Report | Download Stats |
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