ChIPseqR

Identifying Protein Binding Sites in High-Throughput Sequencing Data

Bioconductor version: Release (2.12)

ChIPseqR identifies protein binding sites from ChIP-seq and nucleosome positioning experiments. The model used to describe binding events was developed to locate nucleosomes but should flexible enough to handle other types of experiments as well.

Author: Peter Humburg

Maintainer: Peter Humburg <peter.humburg at well.ox.ac.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ChIPseqR")

To cite this package in a publication, start R and enter:

    citation("ChIPseqR")

Documentation

PDF R Script Introduction to ChIPseqR
PDF   Reference Manual

Details

biocViews Bioinformatics, ChIPseq, Infrastructure, Software
Version 1.14.0
In Bioconductor since BioC 2.5 (R-2.10)
License GPL (>= 2)
Depends R (>= 2.10.0), methods, BiocGenerics, ShortRead
Imports Biostrings, fBasics, GenomicRanges, graphics, grDevices, HilbertVis, IRanges, methods, ShortRead, stats, timsac, utils
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System Requirements
URL
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Package Downloads

Package Source ChIPseqR_1.14.0.tar.gz
Windows Binary ChIPseqR_1.14.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard) ChIPseqR_1.14.0.tgz
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