Bioconductor version: Release (2.12)
This package does optimisation of boolean logic networks of signalling pathways based on a previous knowledge network and a set of data upon perturbation of the nodes in the network.
Author: T.Cokelaer, F.Eduati, A.MacNamara, S.Schrier, C.Terfve
Maintainer: T.Cokelaer <cokelaer at ebi.ac.uk>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("CellNOptR")
To cite this package in a publication, start R and enter:
citation("CellNOptR")
CellNOptR0_1flowchart.pdf | ||
Fig2.pdf | ||
Fig3.pdf | ||
Fig4.pdf | ||
Fig6.pdf | ||
Fig7.pdf | ||
Fig8.pdf | ||
R Script | Main vignette:Playing with networks using CellNOptR | |
Reference Manual | ||
Text | NEWS |
biocViews | Bioinformatics, CellBasedAssays, CellBiology, Proteomics, Software, TimeCourse |
Version | 1.6.0 |
In Bioconductor since | BioC 2.9 (R-2.14) |
License | GPL-2 |
Depends | R (>= 2.15.0), RBGL, graph, methods, hash, ggplot2, RCurl, Rgraphviz |
Imports | |
Suggests | RUnit, BiocGenerics, igraph |
System Requirements | Graphviz version >= 2.2 |
URL | |
Depends On Me | CNORdt, CNORfeeder, CNORfuzzy, CNORode |
Imports Me | |
Suggests Me |
Package Source | CellNOptR_1.6.0.tar.gz |
Windows Binary | CellNOptR_1.6.0.zip (32- & 64-bit) |
Mac OS X 10.6 (Snow Leopard) | CellNOptR_1.6.0.tgz |
Package Downloads Report | Download Stats |
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