Core access to the xmap database (installed separately)


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Documentation for package ‘xmapcore’ version 1.14.0

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A C D E G H I P S T U X

xmapcore-package Provide access to the X:Map annotation database

-- A --

all.arrays xmapcore \'all\' functions
all.chromosomes xmapcore \'all\' functions
all.domains xmapcore \'all\' functions
all.est_exons xmapcore \'all\' functions
all.est_genes xmapcore \'all\' functions
all.est_transcripts xmapcore \'all\' functions
all.exons xmapcore \'all\' functions
all.genes xmapcore \'all\' functions
all.prediction_transcripts xmapcore \'all\' functions
all.probes xmapcore \'all\' functions
all.probesets xmapcore \'all\' functions
all.proteins xmapcore \'all\' functions
all.symbols xmapcore \'all\' functions
all.synonyms xmapcore \'all\' functions
all.transcripts xmapcore \'all\' functions
array.details xmapcore \'details\' functions
array.to.probeset xmapcore \'to\' functions

-- C --

chromosome.details xmapcore \'details\' functions
coding.probesets xmapcore coding functions

-- D --

domain.details xmapcore \'details\' functions
domain.to.gene xmapcore \'to\' functions
domain.to.probeset xmapcore \'to\' functions
domain.to.protein xmapcore \'to\' functions
domain.to.transcript xmapcore \'to\' functions
domains.in.range xmapcore \'range\' functions

-- E --

est_exon.details xmapcore \'details\' functions
est_exon.to.est_gene xmapcore \'to\' functions
est_exon.to.est_transcript xmapcore \'to\' functions
est_exon.to.probeset xmapcore \'to\' functions
est_exons.in.range xmapcore \'range\' functions
est_gene.details xmapcore \'details\' functions
est_gene.to.est_exon xmapcore \'to\' functions
est_gene.to.est_transcript xmapcore \'to\' functions
est_gene.to.probeset xmapcore \'to\' functions
est_genes.in.range xmapcore \'range\' functions
est_transcript.details xmapcore \'details\' functions
est_transcript.to.est_exon xmapcore \'to\' functions
est_transcript.to.est_gene xmapcore \'to\' functions
est_transcript.to.probeset xmapcore \'to\' functions
est_transcripts.in.range xmapcore \'range\' functions
exon.details xmapcore \'details\' functions
exon.to.gene xmapcore \'to\' functions
exon.to.probeset xmapcore \'to\' functions
exon.to.transcript xmapcore \'to\' functions
exonic xmapcore \'filter\' functions
exons.in.range xmapcore \'range\' functions

-- G --

gene.details xmapcore \'details\' functions
gene.to.domain xmapcore \'to\' functions
gene.to.exon xmapcore \'to\' functions
gene.to.exon.probeset.expr xmapcore \'to\' functions
gene.to.exon_probeset xmapcore \'to\' functions
gene.to.probeset xmapcore \'to\' functions
gene.to.protein xmapcore \'to\' functions
gene.to.symbol xmapcore \'to\' functions
gene.to.synonym xmapcore \'to\' functions
gene.to.transcript xmapcore \'to\' functions
genes.in.range xmapcore \'range\' functions
genome.to.protein.coords xmapcore co-ordinate mapping functions
genome.to.transcript.coords xmapcore co-ordinate mapping functions

-- H --

has.probes xmapcore \'filter\' functions
has.probes.atleast xmapcore \'filter\' functions
has.probes.between xmapcore \'filter\' functions
has.probes.in xmapcore \'filter\' functions

-- I --

intergenic xmapcore \'filter\' functions
intronic xmapcore \'filter\' functions
is.exonic xmapcore \'filter\' functions
is.intergenic xmapcore \'filter\' functions
is.intronic xmapcore \'filter\' functions
is.unreliable xmapcore \'filter\' functions

-- P --

prediction_transcript.details xmapcore \'details\' functions
prediction_transcript.to.prediction_exon xmapcore \'to\' functions
prediction_transcript.to.probeset xmapcore \'to\' functions
prediction_transcripts.in.range xmapcore \'range\' functions
probe.details xmapcore \'details\' functions
probe.to.hit xmapcore \'to\' functions
probe.to.probeset xmapcore \'to\' functions
probes.in.range xmapcore \'range\' functions
probeset.details xmapcore \'details\' functions
probeset.to.cdnatranscript xmapcore \'to\' functions
probeset.to.domain xmapcore \'to\' functions
probeset.to.est_exon xmapcore \'to\' functions
probeset.to.est_gene xmapcore \'to\' functions
probeset.to.est_transcript xmapcore \'to\' functions
probeset.to.exon xmapcore \'to\' functions
probeset.to.gene xmapcore \'to\' functions
probeset.to.hit xmapcore \'to\' functions
probeset.to.prediction_transcript xmapcore \'to\' functions
probeset.to.probe xmapcore \'to\' functions
probeset.to.protein xmapcore \'to\' functions
probeset.to.transcript xmapcore \'to\' functions
probesets.in.range xmapcore \'range\' functions
protein.coords.to.genome xmapcore co-ordinate mapping functions
protein.details xmapcore \'details\' functions
protein.to.domain xmapcore \'to\' functions
protein.to.gene xmapcore \'to\' functions
protein.to.probeset xmapcore \'to\' functions
protein.to.transcript xmapcore \'to\' functions
proteins.in.range xmapcore \'range\' functions

-- S --

symbol.to.est_gene xmapcore \'to\' functions
symbol.to.est_transcript xmapcore \'to\' functions
symbol.to.gene xmapcore \'to\' functions
symbol.to.transcript xmapcore \'to\' functions
synonym.details xmapcore \'details\' functions
synonym.to.est_gene xmapcore \'to\' functions
synonym.to.est_transcript xmapcore \'to\' functions
synonym.to.gene xmapcore \'to\' functions
synonym.to.transcript xmapcore \'to\' functions

-- T --

transcript.coords.to.genome xmapcore co-ordinate mapping functions
transcript.details xmapcore \'details\' functions
transcript.to.cdnaprobeset xmapcore \'to\' functions
transcript.to.coding.range xmapcore coding functions
transcript.to.domain xmapcore \'to\' functions
transcript.to.exon xmapcore \'to\' functions
transcript.to.exon_probeset xmapcore \'to\' functions
transcript.to.gene xmapcore \'to\' functions
transcript.to.probeset xmapcore \'to\' functions
transcript.to.protein xmapcore \'to\' functions
transcript.to.synonym xmapcore \'to\' functions
transcript.to.translatedprobes xmapcore \'to\' functions
transcript.to.utr.range xmapcore coding functions
transcripts.in.range xmapcore \'range\' functions

-- U --

unreliable xmapcore \'filter\' functions
utr.probesets xmapcore coding functions

-- X --

xmap.array.type xmapcore \'env\' functions
xmap.clear.cache xmapcore \'utils\' functions
xmap.connect xmapcore \'utils\' functions
xmap.disconnect xmapcore \'utils\' functions
xmap.env xmapcore \'env\' functions
xmap.gene.plot xmapcore \'utils\' functions
xmap.get.param xmapcore \'env\' functions
xmap.range.apply xmapcore \'range\' functions
xmap.set.param xmapcore \'env\' functions
xmap.toggle.caching xmapcore \'utils\' functions
xmapcore Provide access to the X:Map annotation database
xmapcore.all xmapcore \'all\' functions
xmapcore.details xmapcore \'details\' functions
xmapcore.env xmapcore \'env\' functions
xmapcore.filters xmapcore \'filter\' functions
xmapcore.range xmapcore \'range\' functions
xmapcore.to xmapcore \'to\' functions
xmapcore.utils xmapcore \'utils\' functions