Generally Applicable Gene-set Enrichment for Pathway Analysis


[Up] [Top]

Documentation for package ‘gage’ version 2.10.0

Help Pages

carta.gs Common gene set data collections
eg2sym Conversion between Entrez Gene IDs and official gene symbols for human genes.
egSymb Mapping between Entrez Gene IDs and official symbols
esset.grp The non-redundant signcant gene set list
essGene Essential member genes in a gene set
gage GAGE (Generally Applicable Gene-set Enrichment) analysis
gageComp Compare multiple GAGE analyses results
gagePipe GAGE analysis pipeline
gagePrep GAGE (Generally Applicable Gene-set Enrichment) analysis
gageSum GAGE (Generally Applicable Gene-set Enrichment) analysis
geneData View the expression data for selected genes
go.gs Common gene set data collections
gs.KSTest Gene set differential expression test
gs.tTest Gene set differential expression test
gs.zTest Gene set differential expression test
gse16873 GSE16873: a breast cancer microarray dataset
heter.gage GAGE analysis for heterogeneous data
kegg.gs Common gene set data collections
kegg.gs.dise Common gene set data collections
pairData GAGE analysis for heterogeneous data
readExpData Read in expression data
readList Read in gene set data as a named list
sigGeneSet Significant gene set from GAGE analysis
sym2eg Conversion between Entrez Gene IDs and official gene symbols for human genes.