chimera-package |
A package for secondary analysis of fusion products |
addGA |
Class fSet, a class represent fusion data, and methods for processing it |
addGA-method |
Class fSet, a class represent fusion data, and methods for processing it |
addRNA |
Class fSet, a class represent fusion data, and methods for processing it |
addRNA-method |
Class fSet, a class represent fusion data, and methods for processing it |
chimera |
A package for secondary analysis of fusion products |
chimeraSeqs |
A function to generate the nucleotide sequences of a fusion event |
filterList |
A function to filter a list of fSet objects |
fSet |
Class fSet, a class represent fusion data, and methods for processing it |
fSet-class |
Class fSet, a class represent fusion data, and methods for processing it |
fusionData |
Class fSet, a class represent fusion data, and methods for processing it |
fusionData-method |
Class fSet, a class represent fusion data, and methods for processing it |
fusionGA |
Class fSet, a class represent fusion data, and methods for processing it |
fusionGA-method |
Class fSet, a class represent fusion data, and methods for processing it |
fusionGRL |
Class fSet, a class represent fusion data, and methods for processing it |
fusionGRL-method |
Class fSet, a class represent fusion data, and methods for processing it |
fusionName |
A function to extract fusion names for a list of fSet object |
fusionPeptides |
A function associating to a fusion the peptides involved. |
fusionRNA |
Class fSet, a class represent fusion data, and methods for processing it |
fusionRNA-method |
Class fSet, a class represent fusion data, and methods for processing it |
importFusionData |
A function to import fusion data detected by different fusion finders |
plotCoverage |
A function to plot the coverage of a fusion gene |
subreadRun |
A function to generate a bam file for fusions coverage evaluation |
supportingReads |
A function to extract supporting reads values from a list of fSet object |
tophatInstallation |
A function to download tophat, bowtie and samtools |
tophatRun |
A function to generate a bam file for fusions coverage evaluation |