Big Data Management of Genome-wide Sequencing Variants


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Documentation for package ‘SeqArray’ version 1.0.0

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SeqArray-package Big Data Management of Genome-wide Sequencing Variants
seqApply Apply Functions Over Array Margins
SeqArray Big Data Management of Genome-wide Sequencing Variants
seqClose Close a Sequencing GDS File
seqCompress.Option Compression Options for Importing VCF File(s)
seqDelete Delete variables in a Sequencing GDS File
seqExampleFileName Example GDS file
seqGDS2VCF Convert to a VCF file
seqGetData Get Data from a Sequencing GDS file
seqGetFilter Get the Filter of Samples and Variants
seqMerge Merge Multiple Sequencing GDS Files
seqOpen Open a Sequencing GDS File
seqParallel Apply Functions in Parallel
seqSetFilter Set a filter to sample or variant
seqSummary Get the summary of a GDS file
seqTranspose Transpose Data Array
seqVCF.Header Parse the header of a VCF file
seqVCF.SampID Get the sample IDs of a VCF file
seqVCF2GDS Reformat VCF files