CheckAttributes |
Check that a graph is associated with the correct vertex and edge attributes and can be passed to the 'Knet' and 'Knode' function. |
CreateGraph |
Generate a simple undirected graph, with or without vertex weights and edge distances. |
CreateGrid |
Generate a grid-like graph. |
DistGraph |
Compute the vertex pair distance matrix of a graph. |
GraphDiffusion |
Compute the distances between vertex pairs using a diffusion kernel-based method. |
GraphMFPT |
Compute the distances between vertex pairs using a mean first-passage time-based method. |
Knet |
Measure the strength of association between a phenotype and a network by computing the strength of hit clustering on the network. |
Knode |
Rank vertices by their strength of association with high-weight vertices. |
MarkovCentrality |
Compute the Markov centrality score for each vertex in a graph. |
plot.Knet |
Plot the results of the Knet function. |
SpreadHits |
Spread hits across a graph. |
treated.dataframe |
Edges from the genetic interaction network created by Bandyopadhyay et al. (2010) using yeast treated with the DNA-damaging agent methyl methanesulfonate (MMS) |
untreated.dataframe |
Edges from the genetic interaction network created by Bandyopadhyay et al. (2010) using yeast under normal laboratory conditions. |