RNAinteract-package | Analysis of Pairwise Interaction Screens. |
bindscreens | bind RNAinteract objects along screens |
computePI | compute pairwise interaction |
computePValues | compute p-values |
createCellHTSFromFiles | create cellHTS2 object from text files |
createRNAinteract | create a RNAinteract object |
createRNAinteractFromFiles | create an RNAinteract object from text files |
doublePerturbationGrob | Double Perturbation Plot Grob |
embedPCA | Computes a PCA for a pairwise interaction matrix. |
endReport | start and end a RNAinteract report |
estimateMainEffect | estimate main effect |
getChannelNames | get names of screens and channels |
getData | Primary access function for all screen data. |
getIndDesignData | Extract replicates measurements from the screen. |
getMain | get main effects |
getMainNeg | get main effects |
getReplicateData | Extract replicates measurements from the screen. |
getScale | get scale information for a channel. |
getScreenNames | get names of screens and channels |
grid.doublePerturbation | Double Perturbation Plot Grob |
grid.sgiHeatmap | A heatmap grob |
normalizeMainEffectQuery | normalize query main effect |
normalizeMainEffectTemplate | normalize template main effect |
normalizePlateEffect | Normalization of plate effects |
plotDoublePerturbation | Double Perturbation Plot |
plotHeatmap | plots a heatmap for an interaction screen. |
postDrawDetails.doublePerturbation | Double Perturbation Plot Grob |
reportAnnotation | Specialized report functions |
reportDoublePerturbation | Specialized report functions |
reportGeneLists | Specialized report functions |
reportHeatmap | Specialized report functions |
reportMainEffects | Specialized report functions |
reportNetworks | Specialized report functions |
reportScreenData | Specialized report functions |
reportStatistics | Specialized report functions |
RNAinteract | Analysis of Pairwise Interaction Screens. |
RNAinteract-class | Class "RNAinteract" |
sgi | Dataset of class 'RNAinteract' |
sgisubset | subset of an RNAinteract object. |
sgisubsetQueryDesign | Subsetting query genes in a RNAinteract object. |
show-method | Class "RNAinteract" |
startReport | start and end a RNAinteract report |
summarizeScreens | summarize screens |
swaptree | Swaps a branch of a hclust object. |