B C D F G H I L M O P S T U V W misc
bfBuilder_DB | Build Data Packages for Body Fluid Proteomes |
copyTemplates | Write Help Documents |
copyTemplates_DB | Write Help Documents |
createAnnObjs | Creates the AnnObj instances |
createEmptyDPkg | Parse and Write Data into R Data Packages |
createSeeds | Creates the AnnObj instances |
crossBuilder_DB | Build Data Packages for Protein ID Mapping |
dbschema | Creates the AnnObj instances |
dbschema-method | Creates the AnnObj instances |
descriptionInfo | Load packages and data |
dNameBuilder_DB | Build Data Packages for Mapping between ID and Name |
fasta2list | Build Data Packages for Protein ID Mapping |
fileMuncher | Convert Data Format |
fileMuncher_DB | Convert Data Format |
get3DIDBuilt | Get the Url and Release information for Diverse Databases |
get3DIDUrl | Get the Url and Release information for Diverse Databases |
getALLBuilt | Get the Url and Release information for Diverse Databases |
getALLUrl | Get the Url and Release information for Diverse Databases |
getBACELLOBuilt | Get the Url and Release information for Diverse Databases |
getBACELLOUrl | Get the Url and Release information for Diverse Databases |
getBaseData | Convert Data Format |
getBaseParsers | Convert Data Format |
getDBSUBLOCBuilt | Get the Url and Release information for Diverse Databases |
getDBSUBLOCUrl | Get the Url and Release information for Diverse Databases |
getDOMINEBuilt | Get the Url and Release information for Diverse Databases |
getDOMINEUrl | Get the Url and Release information for Diverse Databases |
getGENEINTBuilt | Get the Url and Release information for Diverse Databases |
getGENEINTUrl | Get the Url and Release information for Diverse Databases |
getGOABuilt | Get the Url and Release information for Diverse Databases |
getGOAUrl | Get the Url and Release information for Diverse Databases |
getGOUrl | Get the Url and Release information for Diverse Databases |
getHOMOLOGENEBuilt | Get the Url and Release information for Diverse Databases |
getHOMOLOGENEUrl | Get the Url and Release information for Diverse Databases |
getINPARANOIDBuilt | Get the Url and Release information for Diverse Databases |
getINPARANOIDUrl | Get the Url and Release information for Diverse Databases |
getINTACTBuilt | Get the Url and Release information for Diverse Databases |
getINTACTUrl | Get the Url and Release information for Diverse Databases |
getINTERPROBuilt | Get the Url and Release information for Diverse Databases |
getINTERPROUrl | Get the Url and Release information for Diverse Databases |
getIPIBuilt | Get the Url and Release information for Diverse Databases |
getIPISQUrl | Get the Url and Release information for Diverse Databases |
getIPIUrl | Get the Url and Release information for Diverse Databases |
getKEGGUrl | Get the Url and Release information for Diverse Databases |
getMPPIBuilt | Get the Url and Release information for Diverse Databases |
getMPPIUrl | Get the Url and Release information for Diverse Databases |
getPEPTIDEATLASBuilt | Get the Url and Release information for Diverse Databases |
getPEPTIDEATLASUrl | Get the Url and Release information for Diverse Databases |
getPFAMBuilt | Get the Url and Release information for Diverse Databases |
getPFAMUrl | Get the Url and Release information for Diverse Databases |
getPROSITENAMEBuilt | Get the Url and Release information for Diverse Databases |
getPROSITENAMEUrl | Get the Url and Release information for Diverse Databases |
getREFSEQBuilt | Get the Url and Release information for Diverse Databases |
getREFSEQSQUrl | Get the Url and Release information for Diverse Databases |
getREFSEQUrl | Get the Url and Release information for Diverse Databases |
getRepList | Write Help Documents |
getSCOPBuilt | Get the Url and Release information for Diverse Databases |
getSCOPUrl | Get the Url and Release information for Diverse Databases |
getShortSciName | Get the Url and Release information for Diverse Databases |
getSPBuilt | Get the Url and Release information for Diverse Databases |
getSPUrl | Get the Url and Release information for Diverse Databases |
getSrcBuilt | Get the Url and Release information for Diverse Databases |
getSrcObjs | Convert Data Format |
getSrcSQBuilt | Get the Url and Release information for Diverse Databases |
getSrcSQUrl | Get the Url and Release information for Diverse Databases |
getSrcUrl | Get the Url and Release information for Diverse Databases |
getSYSBODYFLUIDBuilt | Get the Url and Release information for Diverse Databases |
getSYSBODYFLUIDUrl | Get the Url and Release information for Diverse Databases |
getSYSPTMBuilt | Get the Url and Release information for Diverse Databases |
getSYSPTMUrl | Get the Url and Release information for Diverse Databases |
getTREMBLBuilt | Get the Url and Release information for Diverse Databases |
getTREMBLUrl | Get the Url and Release information for Diverse Databases |
GOABuilder_DB | Build Data Packages for Proteomics Gene Ontology |
HomoloGeneBuilder_DB | Build Data Packages for Homolog Protein Group |
idBlast | Build Data Packages for Protein ID Mapping |
InParanoidBuilder_DB | Build Data Packages for Ortholog Protein Group |
intBuilder_DB | Build Data Package for Interaction |
loadFromUrl | Load Files from a Web Site |
makeLLDB | Create a Lazy Loading Database for Package Data Files |
mergeRowByKey | Convert Data Format |
organism2alias | Get the Url and Release information for Diverse Databases |
organism2species | Get the Url and Release information for Diverse Databases |
organism2taxID | Get the Url and Release information for Diverse Databases |
pBase | Define Class and Object |
pBaseBuilder_DB | Build Data Packages for Primary Protein Database |
PeptideAtlasBuilder_DB | Build data package for experimentally identified peptides |
processData | Convert Data Format |
pSeqBuilder_DB | Build Data Packages for Query Sequences |
ptmBuilder_DB | Build Data Packages for Protein Post-Translational Modifications |
scopBuilder_DB | Build Data Package for Structural Classification of Proteins |
sourceURLs | Load packages and data |
speciesNorganism | Get the Url and Release information for Diverse Databases |
splitEntry | Convert Data Format |
subcellBuilder_DB | Build Data Package for Protein Subcellular Location |
taxID2organism | Get the Url and Release information for Diverse Databases |
taxLists | Load packages and data |
twoStepSplit | Convert Data Format |
unzipFile | Load Files from a Web Site |
validateUrl | Load Files from a Web Site |
write3DIDData_DB | Parse and Write Data into R Data Packages |
writeBACELLOData_DB | Parse and Write Data into R Data Packages |
writeData_DB | Parse and Write Data into R Data Packages |
writeDBSUBLOCData_DB | Parse and Write Data into R Data Packages |
writeDescription | Write Help Documents |
writeDescription_DB | Write Help Documents |
writeDOMINEData_DB | Parse and Write Data into R Data Packages |
writeGENEINTData_DB | Parse and Write Data into R Data Packages |
writeGOAData_DB | Parse and Write Data into R Data Packages |
writeGOName_DB | Parse and Write Data into R Data Packages |
writeHomoloGeneData_DB | Parse and Write Data into R Data Packages |
writeInParanoidData_DB | Parse and Write Data into R Data Packages |
writeInput | Convert Data Format |
writeInputBLAST | Convert Data Format |
writeInputINTERPRO | Convert Data Format |
writeInputIPI | Convert Data Format |
writeInputPFAM | Convert Data Format |
writeInputREFSEQ | Convert Data Format |
writeInputSP | Convert Data Format |
writeINTACTData_DB | Parse and Write Data into R Data Packages |
writeINTERPROName_DB | Parse and Write Data into R Data Packages |
writeIPIData_DB | Parse and Write Data into R Data Packages |
writeKEGGName_DB | Parse and Write Data into R Data Packages |
writeManAnno | Write Help Documents |
writeManAnno_DB | Write Help Documents |
writeManMerge | Write Help Documents |
writeManSQ | Write Help Documents |
writeMeta_DB | Parse and Write Data into R Data Packages |
writeMPPIData_DB | Parse and Write Data into R Data Packages |
writeName_DB | Parse and Write Data into R Data Packages |
writeOutput | Convert Data Format |
writePeptideAtlasData_DB | Parse and Write Data into R Data Packages |
writePFAMName_DB | Parse and Write Data into R Data Packages |
writeREFSEQData_DB | Parse and Write Data into R Data Packages |
writeSCOPData_DB | Parse and Write Data into R Data Packages |
writeSPData_DB | Parse and Write Data into R Data Packages |
writeSYSBODYFLUIDData_DB | Parse and Write Data into R Data Packages |
writeSYSPTMData_DB | Parse and Write Data into R Data Packages |
writeTAXName_DB | Parse and Write Data into R Data Packages |
.callPerl | Convert Data Format |
.onLoad | Load packages and data |
.srcUrls | Get the Url and Release information for Diverse Databases |