LVS normalization for Agilent miRNA data


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Documentation for package ‘LVSmiRNA’ version 1.10.0

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boxplot-method Methods for Function boxplot
boxplot-methods Methods for Function boxplot
estVC Robust Linear Model to Estimate Residual Variance and Array Effect
estVC.EList Robust Linear Model to Estimate Residual Variance and Array Effect
estVC.RGList Robust Linear Model to Estimate Residual Variance and Array Effect
exprs-method Methods for Function exprs
exprs-methods Methods for Function exprs
exprs<--method ~~ Methods for Function exprs<- in Package 'Biobase' ~~
exprs<--methods ~~ Methods for Function exprs<- in Package 'Biobase' ~~
featureNames-method Methods for Function featureNames
featureNames-methods Methods for Function featureNames
lvs Least Variant Set selection and Normalization Function(s)
lvs.EList Least Variant Set selection and Normalization Function(s)
lvs.RGList Least Variant Set selection and Normalization Function(s)
MIR Data example
MIR-spike-in Data example
MIR.RA Data example
MIR_RA Data example
normalize.lvs Least Variant Set selection and Normalization Function(s)
plot-method Plot of Residual Variance and Array Effect
preproc-method Methods for Function preproc
preproc-methods Methods for Function preproc
preproc<--method Methods for Function preproc
preproc<--methods Methods for Function preproc
probeNames-method Methods for Function probeNames
probeNames-methods Methods for Function probeNames
read.mir Read in miRNA Data from Agilent Feature Extractiion Output Files
RLM Robust Fitting of Linear Models
rlmFit Fitter Functions for Robust Linear Models
sampleNames-method Methods for Function sampleNames
sampleNames-methods Methods for Function sampleNames
summarize LVSmiRNA Summarization Function(s) for microRNA Microarray
summarize.EList LVSmiRNA Summarization Function(s) for microRNA Microarray
summarize.RGList LVSmiRNA Summarization Function(s) for microRNA Microarray