miRBase: the microRNA database


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Documentation for package ‘mirbase.db’ version 1.1.0

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contextNumber Class "mirnaContext"
contextNumber-method Class "mirnaContext"
contextOverlapSense Class "mirnaContext"
contextOverlapSense-method Class "mirnaContext"
contextOverlapType Class "mirnaContext"
contextOverlapType-method Class "mirnaContext"
contextTranscriptID Class "mirnaContext"
contextTranscriptID-method Class "mirnaContext"
contextTranscriptName Class "mirnaContext"
contextTranscriptName-method Class "mirnaContext"
contextTranscriptSource Class "mirnaContext"
contextTranscriptSource-method Class "mirnaContext"
linksDbId Class "mirnaLinks"
linksDbId-method Class "mirnaLinks"
linksDbLink Class "mirnaLinks"
linksDbLink-method Class "mirnaLinks"
linksDbSecondary Class "mirnaLinks"
linksDbSecondary-method Class "mirnaLinks"
matureAccession Class "mirnaMature"
matureAccession-method Class "mirnaMature"
matureEvidence Class "mirnaMature"
matureEvidence-method Class "mirnaMature"
matureExperiment Class "mirnaMature"
matureExperiment-method Class "mirnaMature"
matureFrom Class "mirnaMature"
matureFrom-method Class "mirnaMature"
matureName Class "mirnaMature"
matureName-method Class "mirnaMature"
matureSimilarity Class "mirnaMature"
matureSimilarity-method Class "mirnaMature"
matureTo Class "mirnaMature"
matureTo-method Class "mirnaMature"
mirbase Bioconductor Custom Annotation Data Package
mirbase.db Bioconductor Custom Annotation Data Package
mirbaseACC2ID MicroRNA IDs to Accessions
mirbaseCHR MicroRNA IDs to Chromosomes
mirbaseCHRLOC MicroRNA IDs to Chromosomal Location
mirbaseCHRLOCEND MicroRNA IDs to Chromosomal Location
mirbaseCLUSTER MicroRNA IDs to Clusters
mirbaseCOMMENT MicroRNA IDs to Comments
mirbaseCONTEXT MicroRNA IDs to Genomic Context
mirbaseContextBimap Class "mirnaContext"
mirbaseContextBimap-class Class "mirnaContext"
mirbaseDESCRIPTION MicroRNA IDs to Descriptions
mirbaseFAMILY MicroRNA IDs to Family
mirbaseHAIRPIN MicroRNA IDs to Hairpin
mirbaseID2ACC MicroRNA IDs to Accessions
mirbaseID2SPECIES MicroRNA IDs to Species
mirbaseLINKS MicroRNA IDs to External Database Links
mirbaseLinksBimap Class "mirnaLinks"
mirbaseLinksBimap-class Class "mirnaLinks"
mirbaseMAPCOUNTS Number of mapped keys for the maps in package mirbase.db
mirbaseMATURE MicroRNA IDs to Mature MicroRNAs
mirbaseMatureBimap Class "mirnaMature"
mirbaseMatureBimap-class Class "mirnaMature"
mirbaseMFE MicroRNA IDs to Minimum Fold Energy
mirbasePMID MicroRNA IDs to References
mirbasePmidBimap Class "mirnaPmid"
mirbasePmidBimap-class Class "mirnaPmid"
mirbaseSEQUENCE MicroRNA IDs to Sequence
mirbaseSPECIES Organism Acronym to Species
mirbaseSPECIES2ID MicroRNA IDs to Species
mirbase_dbconn Collect information about the package annotation DB
mirbase_dbfile Collect information about the package annotation DB
mirbase_dbInfo Collect information about the package annotation DB
mirbase_dbschema Collect information about the package annotation DB
mirnaContext Class "mirnaContext"
mirnaContext-class Class "mirnaContext"
mirnaLinks Class "mirnaLinks"
mirnaLinks-class Class "mirnaLinks"
mirnaMature Class "mirnaMature"
mirnaMature-class Class "mirnaMature"
mirnaPmid Class "mirnaPmid"
mirnaPmid-class Class "mirnaPmid"
pmidAuthor Class "mirnaPmid"
pmidAuthor-method Class "mirnaPmid"
pmidJournal Class "mirnaPmid"
pmidJournal-method Class "mirnaPmid"
pmidMedline Class "mirnaPmid"
pmidMedline-method Class "mirnaPmid"
pmidOrderAdded Class "mirnaPmid"
pmidOrderAdded-method Class "mirnaPmid"
pmidTitle Class "mirnaPmid"
pmidTitle-method Class "mirnaPmid"
show-method Class "mirnaContext"
show-method Class "mirnaLinks"
show-method Class "mirnaMature"
show-method Class "mirnaPmid"