Affymetrix bovine annotation data (chip bovine)

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Documentation for package ‘bovine.db’ version 2.8.1

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bovine Bioconductor annotation data package
bovine.db Bioconductor annotation data package
bovineACCNUM Map Manufacturer identifiers to Accession Numbers
bovineALIAS2PROBE Map between Common Gene Symbol Identifiers and Manufacturer Identifiers
bovineCHR Map Manufacturer IDs to Chromosomes
bovineCHRLENGTHS A named vector for the length of each of the chromosomes
bovineCHRLOC Map Manufacturer IDs to Chromosomal Location
bovineCHRLOCEND Map Manufacturer IDs to Chromosomal Location
bovineENSEMBL Map Ensembl gene accession numbers with Entrez Gene identifiers
bovineENSEMBL2PROBE Map Ensembl gene accession numbers with Entrez Gene identifiers
bovineENTREZID Map between Manufacturer Identifiers and Entrez Gene
bovineENZYME Maps between Manufacturer IDs and Enzyme Commission (EC) Numbers
bovineENZYME2PROBE Maps between Manufacturer IDs and Enzyme Commission (EC) Numbers
bovineGENENAME Map between Manufacturer IDs and Genes
bovineGO Maps between manufacturer IDs and Gene Ontology (GO) IDs
bovineGO2ALLPROBES Maps between manufacturer IDs and Gene Ontology (GO) IDs
bovineGO2PROBE Maps between manufacturer IDs and Gene Ontology (GO) IDs
bovineLOCUSID Map between Manufacturer Identifiers and Entrez Gene
bovineMAPCOUNTS Number of mapped keys for the maps in package bovine.db
bovineORGANISM The Organism information for bovine
bovineORGPKG The Organism information for bovine
bovinePATH Mappings between probe identifiers and KEGG pathway identifiers
bovinePATH2PROBE Mappings between probe identifiers and KEGG pathway identifiers
bovinePFAM Map Manufacturer IDs to Pfam IDs
bovinePMID Maps between Manufacturer Identifiers and PubMed Identifiers
bovinePMID2PROBE Maps between Manufacturer Identifiers and PubMed Identifiers
bovinePROSITE Map Manufacturer IDs to PROSITE ID
bovineREFSEQ Map between Manufacturer Identifiers and RefSeq Identifiers
bovineSYMBOL Map between Manufacturer Identifiers and Gene Symbols
bovineUNIGENE Map between Manufacturer Identifiers and UniGene cluster identifiers
bovineUNIPROT Map Uniprot accession numbers with Entrez Gene identifiers
bovineUNIPROT2PROBE Map Uniprot accession numbers with Entrez Gene identifiers
bovine_dbconn Collect information about the package annotation DB
bovine_dbfile Collect information about the package annotation DB
bovine_dbInfo Collect information about the package annotation DB
bovine_dbschema Collect information about the package annotation DB