Bioconductor AnnotationData Packages

Bioconductor version: Release (2.11)

Package Maintainer Title
adme16cod.db Diego Diez GE CodeLink ADME Rat 16-Assay Bioarray annotation data (chip adme16cod)
ag.db Biocore Data Team Affymetrix Arabidopsis Genome Array annotation data (chip ag)
agcdf Biocore Data Team agcdf
agprobe Biocore Data Team Probe sequence data for microarrays of type ag
anopheles.db0 Biocore Team c/o BioC user list Base Level Annotation databases for anopheles
arabidopsis.db0 Biocore Team c/o BioC user list Base Level Annotation databases for arabidopsis
ath1121501.db Biocore Data Team Affymetrix Arabidopsis ATH1 Genome Array annotation data (chip ath1121501)
ath1121501cdf Biocore Data Team ath1121501cdf
ath1121501probe Biocore Data Team Probe sequence data for microarrays of type ath1121501
barley1cdf Biocore Data Team barley1cdf
barley1probe Biocore Data Team Probe sequence data for microarrays of type barley1
bovine.db Biocore Data Team Affymetrix bovine annotation data (chip bovine)
bovine.db0 Biocore Team c/o BioC user list Base Level Annotation databases for bovine
bovinecdf Biocore Data Team bovinecdf
bovineprobe Biocore Data Team Probe sequence data for microarrays of type bovine
BSgenome.Alyrata.JGI.v1 Jian-Feng Mao Arabidopsis lyrata full genome (JGI version V1.0)
BSgenome.Amellifera.BeeBase.assembly4 Biocore Team c/o BioC user list Apis mellifera (Honey Bee) full genome (BeeBase assembly4)
BSgenome.Amellifera.UCSC.apiMel2 Biocore Team c/o BioC user list Apis mellifera (Honey Bee) full genome (UCSC version apiMel2)
BSgenome.Athaliana.TAIR.04232008 Biocore Team c/o BioC user list Arabidopsis thaliana full genome (TAIR version from April 23, 2008)
BSgenome.Athaliana.TAIR.TAIR9 Biocore Team c/o BioC user list Arabidopsis thaliana full genome (TAIR9)
BSgenome.Btaurus.UCSC.bosTau3 Biocore Team c/o BioC user list Bos taurus (Cow) full genome (UCSC version bosTau3)
BSgenome.Btaurus.UCSC.bosTau4 Biocore Team c/o BioC user list Bos taurus (Cow) full genome (UCSC version bosTau4)
BSgenome.Celegans.UCSC.ce10 Bioconductor Package Maintainer Caenorhabditis elegans (Worm) full genome (UCSC version ce10)
BSgenome.Celegans.UCSC.ce2 Bioconductor Package Maintainer Caenorhabditis elegans (Worm) full genome (UCSC version ce2)
BSgenome.Celegans.UCSC.ce6 Bioconductor Package Maintainer Caenorhabditis elegans (Worm) full genome (UCSC version ce6)
BSgenome.Cfamiliaris.UCSC.canFam2 Biocore Team c/o BioC user list Canis lupus familiaris full genome (UCSC version canFam2)
BSgenome.Cfamiliaris.UCSC.canFam3 Bioconductor Package Maintainer Canis lupus familiaris (Dog) full genome (UCSC version canFam3)
BSgenome.Dmelanogaster.UCSC.dm2 Bioconductor Package Maintainer Drosophila melanogaster (Fly) full genome (UCSC version dm2)
BSgenome.Dmelanogaster.UCSC.dm3 Bioconductor Package Maintainer Drosophila melanogaster (Fly) full genome (UCSC version dm3)
BSgenome.Drerio.UCSC.danRer5 Biocore Team c/o BioC user list Danio rerio (Zebrafish) full genome (UCSC version danRer5)
BSgenome.Drerio.UCSC.danRer6 Biocore Team c/o BioC user list Danio rerio (Zebrafish) full genome (UCSC version danRer6)
BSgenome.Drerio.UCSC.danRer7 Biocore Team c/o BioC user list Danio rerio (Zebrafish) full genome (UCSC version danRer7)
BSgenome.Ecoli.NCBI.20080805 Biocore Team c/o BioC user list Escherichia coli full genomes
BSgenome.Gaculeatus.UCSC.gasAcu1 Biocore Team c/o BioC user list Gasterosteus aculeatus (Stickleback) full genome (UCSC version gasAcu1)
BSgenome.Ggallus.UCSC.galGal3 Bioconductor Package Maintainer Gallus gallus (Chicken) full genome (UCSC version galGal3)
BSgenome.Ggallus.UCSC.galGal4 Bioconductor Package Maintainer Gallus gallus (Chicken) full genome (UCSC version galGal4)
BSgenome.Hsapiens.UCSC.hg17 Biocore Team c/o BioC user list Homo sapiens (Human) full genome (UCSC version hg17)
BSgenome.Hsapiens.UCSC.hg18 Bioconductor Package Maintainer Homo sapiens (Human) full genome (UCSC version hg18)
BSgenome.Hsapiens.UCSC.hg19 Bioconductor Package Maintainer Homo sapiens (Human) full genome (UCSC version hg19)
BSgenome.Mmulatta.UCSC.rheMac2 Bioconductor Package Maintainer Macaca mulatta (Rhesus) full genome (UCSC version rheMac2)
BSgenome.Mmusculus.UCSC.mm10 Bioconductor Package Maintainer Mus musculus (Mouse) full genome (UCSC version mm10)
BSgenome.Mmusculus.UCSC.mm8 Biocore Team c/o BioC user list Mus musculus (Mouse) full genome (UCSC version mm8)
BSgenome.Mmusculus.UCSC.mm9 Bioconductor Package Maintainer Mus musculus (Mouse) full genome (UCSC version mm9)
BSgenome.Ptroglodytes.UCSC.panTro2 Biocore Team c/o BioC user list Pan troglodytes (Chimp) full genome (UCSC version panTro2)
BSgenome.Ptroglodytes.UCSC.panTro3 Bioconductor Package Maintainer Pan troglodytes (Chimp) full genome (UCSC version panTro3)
BSgenome.Rnorvegicus.UCSC.rn4 Biocore Team c/o BioC user list Rattus norvegicus (Rat) full genome (UCSC version rn4)
BSgenome.Rnorvegicus.UCSC.rn5 Bioconductor Package Maintainer Rattus norvegicus (Rat) full genome (UCSC version rn5)
BSgenome.Scerevisiae.UCSC.sacCer1 Biocore Team c/o BioC user list Saccharomyces cerevisiae (Yeast) full genome (UCSC version sacCer1)
BSgenome.Scerevisiae.UCSC.sacCer2 Bioconductor Package Maintainer Saccharomyces cerevisiae (Yeast) full genome (UCSC version sacCer2)
BSgenome.Scerevisiae.UCSC.sacCer3 Bioconductor Package Maintainer Saccharomyces cerevisiae (Yeast) full genome (UCSC version sacCer3)
BSgenome.Tgondii.ToxoDB.7.0 Matthew Croken Toxoplasma gondii ME49 (ToxoDB-7.0)
bsubtiliscdf Biocore Data Team bsubtiliscdf
bsubtilisprobe Biocore Data Team Probe sequence data for microarrays of type bsubtilis
canine.db Biocore Data Team Affymetrix canine annotation data (chip canine)
canine.db0 Biocore Team c/o BioC user list Base Level Annotation databases for canine
canine2.db Biocore Data Team Affymetrix canine2 annotation data (chip canine2)
canine2cdf Biocore Data Team canine2cdf
canine2probe Biocore Data Team Probe sequence data for microarrays of type canine2
caninecdf Biocore Data Team caninecdf
canineprobe Biocore Data Team Probe sequence data for microarrays of type canine
celegans.db Biocore Data Team Affymetrix celegans annotation data (chip celegans)
celeganscdf Biocore Data Team celeganscdf
celegansprobe Biocore Data Team Probe sequence data for microarrays of type celegans
chicken.db Biocore Data Team Affymetrix chicken annotation data (chip chicken)
chicken.db0 Biocore Team c/o BioC user list Base Level Annotation databases for chicken
chickencdf Biocore Data Team chickencdf
chickenprobe Biocore Data Team Probe sequence data for microarrays of type chicken
chimp.db0 Biocore Team c/o BioC user list Base Level Annotation databases for chimp
citruscdf Biocore Data Team citruscdf
citrusprobe Biocore Data Team Probe sequence data for microarrays of type citrus
cMAP Biocore Data Team A data package containing annotation data for cMAP
cottoncdf Biocore Data Team cottoncdf
cottonprobe Biocore Data Team Probe sequence data for microarrays of type cotton
cyp450cdf Biocore Data Team cyp450cdf
DO.db Jiang Li A set of annotation maps describing the entire Disease Ontology
drosgenome1.db Biocore Data Team Affymetrix Drosophila Genome Array annotation data (chip drosgenome1)
drosgenome1cdf Biocore Data Team drosgenome1cdf
drosgenome1probe Biocore Data Team Probe sequence data for microarrays of type drosgenome1
drosophila2.db Biocore Data Team Affymetrix Drosophila Genome 2.0 Array annotation data (chip drosophila2)
drosophila2cdf Biocore Data Team drosophila2cdf
drosophila2probe Biocore Data Team Probe sequence data for microarrays of type drosophila2
ecoli2.db Biocore Data Team Affymetrix E. coli Genome 2.0 Array annotation data (chip ecoli2)
ecoli2cdf Biocore Data Team ecoli2cdf
ecoli2probe Biocore Data Team Probe sequence data for microarrays of type ecoli2
ecoliasv2cdf Biocore Data Team ecoliasv2cdf
ecoliasv2probe Biocore Data Team Probe sequence data for microarrays of type ecoliasv2
ecolicdf Biocore Data Team ecolicdf
ecoliK12.db0 Biocore Team c/o BioC user list Base Level Annotation databases for E coli K12 Strain
ecoliprobe Biocore Data Team Probe sequence data for microarrays of type ecoli
ecoliSakai.db0 Biocore Team c/o BioC user list Base Level Annotation databases for E coli Sakai Strain
FDb.FANTOM4.promoters.hg19 Tim Triche, Jr. Annotation package for FANTOM4 promoters identified from THP-1 cells
FDb.InfiniumMethylation.hg19 Tim Triche, Jr. Annotation package for Illumina Infinium DNA methylation array probes
FDb.UCSC.snp135common.hg19 Tim Triche, Jr. UCSC common SNPs track for dbSNP build 135
FDb.UCSC.tRNAs Biocore Data Team Annotation package for FeatureDb object(s)
fly.db0 Biocore Team c/o BioC user list Base Level Annotation databases for fly
gahgu133a.db Francesco Ferrari Genecards derived annotations for gahgu133a custom probeset definitions
gahgu133acdf Francesco Ferrari gahgu133acdf
gahgu133aprobe Francesco Ferrari Probe sequence data for microarrays of type gahgu133a
gahgu133b.db Francesco Ferrari Genecards derived annotations for gahgu133b custom probeset definitions
gahgu133bcdf Francesco Ferrari gahgu133bcdf
gahgu133bprobe Francesco Ferrari Probe sequence data for microarrays of type gahgu133b
gahgu133plus2.db Francesco Ferrari Genecards derived annotations for gahgu133plus2 custom probeset definitions
gahgu133plus2cdf Francesco Ferrari gahgu133plus2cdf
gahgu133plus2probe Francesco Ferrari Probe sequence data for microarrays of type gahgu133plus2
gahgu95av2.db Francesco Ferrari Genecards derived annotations for gahgu95av2 custom probeset definitions
gahgu95av2cdf Francesco Ferrari gahgu95av2cdf
gahgu95av2probe Francesco Ferrari Probe sequence data for microarrays of type gahgu95av2
gahgu95b.db Francesco Ferrari Genecards derived annotations for gahgu95b custom probeset definitions
gahgu95bcdf Francesco Ferrari gahgu95bcdf
gahgu95bprobe Francesco Ferrari Probe sequence data for microarrays of type gahgu95b
gahgu95c.db Francesco Ferrari Genecards derived annotations for gahgu95c custom probeset definitions
gahgu95ccdf Francesco Ferrari gahgu95ccdf
gahgu95cprobe Francesco Ferrari Probe sequence data for microarrays of type gahgu95c
gahgu95d.db Francesco Ferrari Genecards derived annotations for gahgu95d custom probeset definitions
gahgu95dcdf Francesco Ferrari gahgu95dcdf
gahgu95dprobe Francesco Ferrari Probe sequence data for microarrays of type gahgu95d
gahgu95e.db Francesco Ferrari Genecards derived annotations for gahgu95e custom probeset definitions
gahgu95ecdf Francesco Ferrari gahgu95ecdf
gahgu95eprobe Francesco Ferrari Probe sequence data for microarrays of type gahgu95e
genomewidesnp5Crlmm Benilton S Carvalho, Robert Scharpf Metadata for fast genotyping with the 'crlmm' package
genomewidesnp6Crlmm Benilton S Carvalho, Robert Scharpf Metadata for fast genotyping with the 'crlmm' package
GGHumanMethCancerPanelv1.db Sean Davis Illumina Golden Gate Human Methylation Cancer Panel Version 1 annotation data (chip GGHumanMethCancerPanelv1)
GO.db Biocore Data Team A set of annotation maps describing the entire Gene Ontology
gp53cdf Biocore Data Team gp53cdf
h10kcod.db Diego Diez GE CodeLink UniSet Human I Bioarray (~10 000 human genes) annotation data (chip h10kcod)
h20kcod.db Diego Diez GE CodeLink UniSet Human 20k I Bioarray annotation data (chip h20kcod)
hapmap370k Matthew Ritchie Example Illumina 370k HapMap Data
hcg110.db Biocore Data Team Affymetrix Human Cancer G110 Array annotation data (chip hcg110)
hcg110cdf Biocore Data Team hcg110cdf
hcg110probe Biocore Data Team Probe sequence data for microarrays of type hcg110
hgfocus.db Biocore Data Team Affymetrix Human Genome Focus Array annotation data (chip hgfocus)
hgfocuscdf Biocore Data Team hgfocuscdf
hgfocusprobe Biocore Data Team Probe sequence data for microarrays of type hgfocus
hgu133a.db Biocore Data Team Affymetrix Human Genome U133 Set annotation data (chip hgu133a)
hgu133a2.db Biocore Data Team Affymetrix Human Genome U133A 2.0 Array annotation data (chip hgu133a2)
hgu133a2cdf Biocore Data Team hgu133a2cdf
hgu133a2probe Biocore Data Team Probe sequence data for microarrays of type hgu133a2
hgu133acdf Biocore Data Team hgu133acdf
hgu133afrmavecs Matthew N. McCall Vectors used by frma for microarrays of type hgu133a
hgu133aprobe Biocore Data Team Probe sequence data for microarrays of type hgu133a
hgu133atagcdf Biocore Data Team hgu133atagcdf
hgu133atagprobe Biocore Data Team Probe sequence data for microarrays of type hgu133atag
hgu133b.db Biocore Data Team Affymetrix Human Genome U133 Set annotation data (chip hgu133b)
hgu133bcdf Biocore Data Team hgu133bcdf
hgu133bprobe Biocore Data Team Probe sequence data for microarrays of type hgu133b
hgu133plus2.db Biocore Data Team Affymetrix Human Genome U133 Plus 2.0 Array annotation data (chip hgu133plus2)
hgu133plus2cdf Biocore Data Team hgu133plus2cdf
hgu133plus2frmavecs Matthew N. McCall Vectors used by frma for microarrays of type hgu133plus2
hgu133plus2probe Biocore Data Team Probe sequence data for microarrays of type hgu133plus2
hgu219.db Biocore Data Team Affymetrix Human Genome 219 Plate annotation data (chip hgu219)
hgu219cdf Biocore Data Team hgu219cdf
hgu219probe Biocore Data Team Probe sequence data for microarrays of type hgu219
hgu95a.db Biocore Data Team Affymetrix Human Genome U95 Set annotation data (chip hgu95a)
hgu95acdf Biocore Data Team hgu95acdf
hgu95aprobe Biocore Data Team Probe sequence data for microarrays of type hgu95a
hgu95av2 Biocore Data Team Affymetrix Human Genome U95 Set Annotation Data (hgu95av2)
hgu95av2.db Biocore Data Team Affymetrix Human Genome U95 Set annotation data (chip hgu95av2)
hgu95av2cdf Biocore Data Team hgu95av2cdf
hgu95av2probe Biocore Data Team Probe sequence data for microarrays of type hgu95av2
hgu95b.db Biocore Data Team Affymetrix Human Genome U95 Set annotation data (chip hgu95b)
hgu95bcdf Biocore Data Team hgu95bcdf
hgu95bprobe Biocore Data Team Probe sequence data for microarrays of type hgu95b
hgu95c.db Biocore Data Team Affymetrix Human Genome U95 Set annotation data (chip hgu95c)
hgu95ccdf Biocore Data Team hgu95ccdf
hgu95cprobe Biocore Data Team Probe sequence data for microarrays of type hgu95c
hgu95d.db Biocore Data Team Affymetrix Human Genome U95 Set annotation data (chip hgu95d)
hgu95dcdf Biocore Data Team hgu95dcdf
hgu95dprobe Biocore Data Team Probe sequence data for microarrays of type hgu95d
hgu95e.db Biocore Data Team Affymetrix Human Genome U95 Set annotation data (chip hgu95e)
hgu95ecdf Biocore Data Team hgu95ecdf
hgu95eprobe Biocore Data Team Probe sequence data for microarrays of type hgu95e
hguatlas13k.db Biocore Data Team Clontech BD Atlas Long Oligos Human 13K annotation data (chip hguatlas13k)
hgubeta7.db Biocore Data Team Unknown annotation data (chip hgubeta7)
hguDKFZ31.db Biocore Data Team Unknown annotation data (chip hguDKFZ31)
hgug4100a.db Biocore Data Team Agilent Human 1 cDNA Microarray Kit annotation data (chip hgug4100a)
hgug4101a.db Biocore Data Team Agilent Human 2 cDNA Microarry Kit annotation data (chip hgug4101a)
hgug4110b.db Biocore Data Team Agilent Human 1A (V2) annotation data (chip hgug4110b)
hgug4111a.db Biocore Data Team Agilent Human 1B annotation data (chip hgug4111a)
hgug4112a.db Biocore Data Team Agilent "Human Genome, Whole" annotation data (chip hgug4112a)
hgug4845a.db Ralph Scherer agilent AMADID 026652 annotation data (chip hgug4845a)
hguqiagenv3.db Biocore Data Team Qiagen Qiagen V3.0 oligo set annotation data (chip hguqiagenv3)
hi16cod.db Diego Diez GE CodeLink Human Inflammation 16 Bioarray annotation data (chip hi16cod)
hivprtplus2cdf Biocore Data Team hivprtplus2cdf
hom.At.inp.db Biocore Data Team Homology information for Arabidopsis thaliana from Inparanoid
hom.Ce.inp.db Biocore Data Team Homology information for Caenorhabditis elegans from Inparanoid
hom.Dm.inp.db Biocore Data Team Homology information for Drosophila melanogaster from Inparanoid
hom.Dr.inp.db Biocore Data Team Homology information for Danio rerio from Inparanoid
hom.Hs.inp.db Biocore Data Team Homology information for Homo Sapiens from Inparanoid
hom.Mm.inp.db Biocore Data Team Homology information for Mus musculus from Inparanoid
hom.Rn.inp.db Biocore Data Team Homology information for Rattus norvegicus from Inparanoid
hom.Sc.inp.db Biocore Data Team Homology information for Saccharomyces cerevisiae from Inparanoid
Homo.sapiens Bioconductor Package Maintainer Annotation package for the Homo.sapiens object
hs25kresogen.db Simon de Bernard RNG_MRC Human Pangenomic 25k Set annotation data (chip hs25kresogen)
Hs6UG171.db Biocore Data Team A package containing metadata for Hs6UG171 arrays
HsAgilentDesign026652.db Biocore Data Team Agilent Chips that use Agilent design number 026652 annotation data (chip HsAgilentDesign026652)
hthgu133a.db Biocore Data Team Affymetrix HT Human Genome U133 Array Plate Set annotation data (chip hthgu133a)
hthgu133acdf Biocore Data Team hthgu133acdf
hthgu133aprobe Biocore Data Team Probe sequence data for microarrays of type hthgu133a
hthgu133b.db Biocore Data Team Affymetrix HT Human Genome U133 Array Plate Set annotation data (chip hthgu133b)
hthgu133bcdf Biocore Data Team hthgu133bcdf
hthgu133bprobe Biocore Data Team Probe sequence data for microarrays of type hthgu133b
hthgu133pluspmcdf Biocore Data Team hthgu133pluspmcdf
hthgu133pluspmprobe Biocore Data Team Probe sequence data for microarrays of type hthgu133pluspm
htmg430acdf Biocore Data Team htmg430acdf
htmg430aprobe Biocore Data Team Probe sequence data for microarrays of type htmg430a
htmg430bcdf Biocore Data Team htmg430bcdf
htmg430bprobe Biocore Data Team Probe sequence data for microarrays of type htmg430b
htmg430pmcdf Biocore Data Team htmg430pmcdf
htmg430pmprobe Biocore Data Team Probe sequence data for microarrays of type htmg430pm
htrat230pmcdf Biocore Data Team htrat230pmcdf
htrat230pmprobe Biocore Data Team Probe sequence data for microarrays of type htrat230pm
htratfocuscdf Biocore Data Team htratfocuscdf
htratfocusprobe Biocore Data Team Probe sequence data for microarrays of type htratfocus
hu35ksuba.db Biocore Data Team Affymetrix Human Genome HU35K Set annotation data (chip hu35ksuba)
hu35ksubacdf Biocore Data Team hu35ksubacdf
hu35ksubaprobe Biocore Data Team Probe sequence data for microarrays of type hu35ksuba
hu35ksubb.db Biocore Data Team Affymetrix Human Genome HU35K Set annotation data (chip hu35ksubb)
hu35ksubbcdf Biocore Data Team hu35ksubbcdf
hu35ksubbprobe Biocore Data Team Probe sequence data for microarrays of type hu35ksubb
hu35ksubc.db Biocore Data Team Affymetrix Human Genome HU35K Set annotation data (chip hu35ksubc)
hu35ksubccdf Biocore Data Team hu35ksubccdf
hu35ksubcprobe Biocore Data Team Probe sequence data for microarrays of type hu35ksubc
hu35ksubd.db Biocore Data Team Affymetrix Human Genome HU35K Set annotation data (chip hu35ksubd)
hu35ksubdcdf Biocore Data Team hu35ksubdcdf
hu35ksubdprobe Biocore Data Team Probe sequence data for microarrays of type hu35ksubd
hu6800.db Biocore Data Team Affymetrix HuGeneFL Genome Array annotation data (chip hu6800)
hu6800cdf Biocore Data Team hu6800cdf
hu6800probe Biocore Data Team Probe sequence data for microarrays of type hu6800
hu6800subacdf Biocore Data Team hu6800subacdf
hu6800subbcdf Biocore Data Team hu6800subbcdf
hu6800subccdf Biocore Data Team hu6800subccdf
hu6800subdcdf Biocore Data Team hu6800subdcdf
huex.1.0.st.v2frmavecs Matthew N. McCall Vectors used by frma for microarrays of type huex.1.0.st.v2
HuExExonProbesetLocation Raffaele A. Calogero Exon-level probeset chromosome location for microarrays of type HuEx
HuExExonProbesetLocationHg18 Raffaele A. Calogero Exon-level probeset chromosome location for microarrays of type HuEx
HuExExonProbesetLocationHg19 Raffaele A. Calogero Exon-level probeset chromosome location for microarrays of type HuEx
hugene.1.0.st.v1frmavecs Matthew N. McCall Vectors used by frma for microarrays of type hugene.1.0.st.v1frmavecs
hugene10stprobeset.db Li, Arthur Affymetrix Human Gene 1.0-ST Probeset Array Revision 8 annotation data (chip hugene10stprobeset)
hugene10sttranscriptcluster.db Li, Arthur Affymetrix Human Gene 1.0-ST Array Transcriptcluster Revision 8 annotation data (chip hugene10sttranscriptcluster)
hugene10stv1cdf Biocore Data Team hugene10stv1cdf
hugene10stv1probe Biocore Data Team Probe sequence data for microarrays of type hugene10stv1
hugene11stprobeset.db Li, Arthur Affymetrix Human Gene 1.1-ST Array Probeset Revision 4 annotation data (chip hugene11stprobeset)
hugene11sttranscriptcluster.db Li, Arthur Affymetrix Human Gene 1.1-ST Array Transcriptcluster Revision 4 annotation data (chip hugene11sttranscriptcluster)
human.db0 Biocore Team c/o BioC user list Base Level Annotation databases for human
human1mduov3bCrlmm Matthew Ritchie Metadata for fast genotyping with the 'crlmm' package
human1mv1cCrlmm Matthew Ritchie Metadata for fast genotyping with the 'crlmm' package
human370quadv3cCrlmm Matthew Ritchie Metadata for fast genotyping with the 'crlmm' package
human370v1cCrlmm Matthew Ritchie Metadata for fast genotyping with the 'crlmm' package
human550v3bCrlmm Matthew Ritchie Metadata for fast genotyping with the 'crlmm' package
human610quadv1bCrlmm Matthew Ritchie Metadata for fast genotyping with the 'crlmm' package
human650v3aCrlmm Matthew Ritchie Metadata for fast genotyping with the 'crlmm' package
human660quadv1aCrlmm Matthew Ritchie Metadata for fast genotyping with the 'crlmm' package
humanCHRLOC Biocore Data Team A data package containing annotation data for humanCHRLOC
humancytosnp12v2p1hCrlmm Matthew Ritchie Metadata for fast genotyping with the 'crlmm' package
humanomni1quadv1bCrlmm Matthew Ritchie Metadata for fast genotyping with the 'crlmm' package
humanomni25quadv1bCrlmm Matthew Ritchie Metadata for fast genotyping with the 'crlmm' package
humanomniexpress12v1bCrlmm Matthew Ritchie Metadata for fast genotyping with the 'crlmm' package
HuO22.db Biocore Data Team FHCRC Genomics Shared Resource HuO22 Annotation Data (HuO22)
hwgcod.db Diego Diez GE CodeLink Human Whole Genome Bioarray (~55 000 human genes) annotation data (chip hwgcod)
IlluminaHumanMethylation27k.db Tim Triche, Jr. Illumina Illumina Human Methylation 27k annotation data (chip IlluminaHumanMethylation27k)
IlluminaHumanMethylation27kmanifest Kasper Daniel Hansen Annotation for Illumina's 27k methylation arrays
IlluminaHumanMethylation450k.db Tim Triche, Jr. Illumina Human Methylation 450k annotation data
IlluminaHumanMethylation450kannotation.ilmn.v1.2 Kasper Daniel Hansen Annotation for Illumina's 450k methylation arrays
IlluminaHumanMethylation450kmanifest Kasper Daniel Hansen Annotation for Illumina's 450k methylation arrays
IlluminaHumanMethylation450kprobe Tim Triche, Jr. Probe sequence data for microarrays of type IlluminaHumanMethylation450k
illuminaHumanv1.db Mark Dunning Illumina HumanWG6v1 annotation data (chip illuminaHumanv1)
illuminaHumanv2.db Mark Dunning Illumina HumanWG6v2 annotation data (chip illuminaHumanv2)
illuminaHumanv2BeadID.db Mark Dunning Illumina HumanWGv2 annotation data (chip illuminaHumanv2BeadID)
illuminaHumanv3.db Mark Dunning Illumina HumanHT12v3 annotation data (chip illuminaHumanv3)
illuminaHumanv4.db Mark Dunning Illumina HumanHT12v4 annotation data (chip illuminaHumanv4)
illuminaHumanWGDASLv3.db Mark Dunning Illumina HumanHT12WGDASLv3 annotation data (chip illuminaHumanWGDASLv3)
illuminaHumanWGDASLv4.db Mark Dunning Illumina HumanWGDASLv4 annotation data (chip illuminaHumanWGDASLv4)
illuminaMousev1.db Mark Dunning Illumina MouseWG6v1 annotation data (chip illuminaMousev1)
illuminaMousev1p1.db Mark Dunning Illumina MouseWG6v1p1 annotation data (chip illuminaMousev1p1)
illuminaMousev2.db Mark Dunning Illumina MouseWG6v2 annotation data (chip illuminaMousev2)
illuminaRatv1.db Mark Dunning Illumina Ratv1 annotation data (chip illuminaRatv1)
indac.db Biocore Data Team INDAC FlyChip_long_oligonucleotide_002 (FL002) annotation data (chip indac)
JazaeriMetaData.db Biocore Data Team A data package containing annotation data for JazaeriMetaData
KEGG.db Biocore Data Team A set of annotation maps for KEGG
LAPOINTE.db Biocore Data Team A package containing metadata for LAPOINTE arrays
lumiHumanAll.db Biocore Data Team me Human Illumina annotation data (chip lumiHumanAll)
lumiHumanIDMapping Gilbert Feng Illumina Identifier mapping for Human
lumiMouseAll.db Biocore Data Team me Mouse Illumina annotation data (chip lumiMouseAll)
lumiMouseIDMapping Gilbert Feng Illumina Identifier mapping for Mouse
lumiRatAll.db Biocore Data Team me Mouse Illumina annotation data (chip lumiRatAll)
lumiRatIDMapping Gilbert Feng Illumina Identifier mapping for Rat
m10kcod.db Diego Diez GE CodeLink UniSet Mouse I Bioarray (~10 000 mouse gene targets) annotation data (chip m10kcod)
m20kcod.db Diego Diez GE CodeLink UniSet Mouse 20k I Bioarray annotation data (chip m20kcod)
maizecdf Biocore Data Team maizecdf
maizeprobe Biocore Data Team Probe sequence data for microarrays of type maize
malaria.db0 Biocore Team c/o BioC user list Base Level Annotation databases for malaria
medicagocdf Biocore Data Team medicagocdf
medicagoprobe Biocore Data Team Probe sequence data for microarrays of type medicago
mgu74a.db Biocore Data Team Affymetrix Murine Genome U74v2 annotation data (chip mgu74a)
mgu74acdf Biocore Data Team mgu74acdf
mgu74aprobe Biocore Data Team Probe sequence data for microarrays of type mgu74a
mgu74av2.db Biocore Data Team Affymetrix Murine Genome U74v2 annotation data (chip mgu74av2)
mgu74av2cdf Biocore Data Team mgu74av2cdf
mgu74av2probe Biocore Data Team Probe sequence data for microarrays of type mgu74av2
mgu74b.db Biocore Data Team Affymetrix Murine Genome U74v2 annotation data (chip mgu74b)
mgu74bcdf Biocore Data Team mgu74bcdf
mgu74bprobe Biocore Data Team Probe sequence data for microarrays of type mgu74b
mgu74bv2.db Biocore Data Team Affymetrix Murine Genome U74v2 annotation data (chip mgu74bv2)
mgu74bv2cdf Biocore Data Team mgu74bv2cdf
mgu74bv2probe Biocore Data Team Probe sequence data for microarrays of type mgu74bv2
mgu74c.db Biocore Data Team Affymetrix Murine Genome U74v2 annotation data (chip mgu74c)
mgu74ccdf Biocore Data Team mgu74ccdf
mgu74cprobe Biocore Data Team Probe sequence data for microarrays of type mgu74c
mgu74cv2.db Biocore Data Team Affymetrix Murine Genome U74v2 annotation data (chip mgu74cv2)
mgu74cv2cdf Biocore Data Team mgu74cv2cdf
mgu74cv2probe Biocore Data Team Probe sequence data for microarrays of type mgu74cv2
mguatlas5k.db Biocore Data Team Clontech BD Atlas Long Oligos Mouse 5K annotation data (chip mguatlas5k)
mgug4104a.db Biocore Data Team Agilent annotation data (chip mgug4104a)
mgug4120a.db Biocore Data Team Agilent annotation data (chip mgug4120a)
mgug4121a.db Biocore Data Team Agilent Mouse annotation data (chip mgug4121a)
mgug4122a.db Biocore Data Team Agilent "Mouse Genome, Whole" annotation data (chip mgug4122a)
mi16cod.db Diego Diez GE CodeLink Mouse Inflammation 16 Bioarray annotation data (chip mi16cod)
mirbase.db James F. Reid miRBase: the microRNA database
mirna102xgaincdf Biocore Data Team mirna102xgaincdf
mirna10cdf Biocore Data Team mirna10cdf
mirna10probe Biocore Data Team Probe sequence data for microarrays of type mirna10
mirna20cdf Biocore Data Team mirna20cdf
mm24kresogen.db Simon de Bernard RNG_MRC Mouse Pangenomic 24k Set annotation data (chip mm24kresogen)
MmAgilentDesign026655.db Biocore Data Team Agilent Chips that use Agilent design number 026655 annotation data (chip MmAgilentDesign026655)
moe430a.db Biocore Data Team Affymetrix Mouse Expression Set 430 annotation data (chip moe430a)
moe430acdf Biocore Data Team moe430acdf
moe430aprobe Biocore Data Team Probe sequence data for microarrays of type moe430a
moe430b.db Biocore Data Team Affymetrix Mouse Expression Set 430 annotation data (chip moe430b)
moe430bcdf Biocore Data Team moe430bcdf
moe430bprobe Biocore Data Team Probe sequence data for microarrays of type moe430b
MoExExonProbesetLocation Raffaele A. Calogero Exon-level probeset chromosome location for microarrays of type MoEx
mogene10stprobeset.db Li, Arthur Affymetrix Mouse Gene 1.0-ST Array Probeset Revision 8 annotation data (chip mogene10stprobeset)
mogene10sttranscriptcluster.db Li, Arthur Affymetrix Mouse Gene 1.0-ST Array Transcriptcluster Revision 8 annotation data (chip mogene10sttranscriptcluster)
mogene10stv1cdf Biocore Data Team mogene10stv1cdf
mogene10stv1probe Biocore Data Team Probe sequence data for microarrays of type mogene10stv1
mogene11stprobeset.db Li, Arthur Affymetrix Mouse Gene 1.1-ST Array Probeset Revision 4 annotation data (chip mogene11stprobeset)
mogene11sttranscriptcluster.db Li, Arthur Affymetrix Mouse Gene 1.1-ST Array Transcriptcluster Revision 4 annotation data (chip mogene11sttranscriptcluster)
mouse.db0 Biocore Team c/o BioC user list Base Level Annotation databases for mouse
mouse4302.db Biocore Data Team Affymetrix Mouse Genome 430 2.0 Array annotation data (chip mouse4302)
mouse4302cdf Biocore Data Team mouse4302cdf
mouse4302frmavecs Matthew N. McCall Vectors used by frma for microarrays of type mouse4302
mouse4302probe Biocore Data Team Probe sequence data for microarrays of type mouse4302
mouse430a2.db Biocore Data Team Affymetrix Mouse Genome 430A 2.0 Array annotation data (chip mouse430a2)
mouse430a2cdf Biocore Data Team mouse430a2cdf
mouse430a2frmavecs Matthew N. McCall Vectors used by frma for microarrays of type mouse430a2
mouse430a2probe Biocore Data Team Probe sequence data for microarrays of type mouse430a2
mouseCHRLOC Biocore Data Team A data package containing annotation data for mouseCHRLOC
mpedbarray.db Biocore Data Team FHCRC Nelson Lab mpedbarray Annotation Data (mpedbarray)
mu11ksuba.db Biocore Data Team Affymetrix Murine 11K Set annotation data (chip mu11ksuba)
mu11ksubacdf Biocore Data Team mu11ksubacdf
mu11ksubaprobe Biocore Data Team Probe sequence data for microarrays of type mu11ksuba
mu11ksubb.db Biocore Data Team Affymetrix Murine 11K Set annotation data (chip mu11ksubb)
mu11ksubbcdf Biocore Data Team mu11ksubbcdf
mu11ksubbprobe Biocore Data Team Probe sequence data for microarrays of type mu11ksubb
Mu15v1.db Biocore Data Team FHCRC Genomics Shared Resource Mu15v1 Annotation Data (Mu15v1)
mu19ksuba.db Biocore Data Team Affymetrix Murine Genome 19k Set annotation data (chip mu19ksuba)
mu19ksubacdf Biocore Data Team mu19ksubacdf
mu19ksubb.db Biocore Data Team Affymetrix Murine Genome 19k Set annotation data (chip mu19ksubb)
mu19ksubbcdf Biocore Data Team mu19ksubbcdf
mu19ksubc.db Biocore Data Team Affymetrix Murine Genome 19k Set annotation data (chip mu19ksubc)
mu19ksubccdf Biocore Data Team mu19ksubccdf
Mu22v3.db Biocore Data Team FHCRC Genomics Shared Resource Mu22v3 Annotation Data (Mu22v3)
mu6500subacdf Biocore Data Team mu6500subacdf
mu6500subbcdf Biocore Data Team mu6500subbcdf
mu6500subccdf Biocore Data Team mu6500subccdf
mu6500subdcdf Biocore Data Team mu6500subdcdf
Mus.musculus Bioconductor Package Maintainer Annotation package for the Mus.musculus object
mwgcod.db Diego Diez GE CodeLink Mouse Whole Genome Bioarray (~36 000 mouse gene targets) annotation data (chip mwgcod)
Norway981.db Biocore Data Team Norway981 http://genome-www5.stanford.edu/ Annotation Data (Norway981)
nugohs1a520180.db Philip de Groot Affymetrix nugohs1a520180 annotation data (chip nugohs1a520180)
nugohs1a520180cdf Philip de Groot nugohs1a520180cdf
nugohs1a520180probe Philip de Groot Probe sequence data for microarrays of type nugohs1a520180
nugomm1a520177.db Philip de Groot Affymetrix nugomm1a520177 annotation data (chip nugomm1a520177)
nugomm1a520177cdf Philip de Groot nugomm1a520177cdf
nugomm1a520177probe Philip de Groot Probe sequence data for microarrays of type nugomm1a520177
oligoData Benilton Carvalho Dataset samples for the oligo package
OperonHumanV3.db Biocore Data Team FHCRC Nelson Lab OperonHumanV3 Annotation Data (OperonHumanV3)
org.Ag.eg.db Biocore Data Team Genome wide annotation for Anopheles
org.At.tair.db Biocore Data Team Genome wide annotation for Arabidopsis
org.Bt.eg.db Biocore Data Team Genome wide annotation for Bovine
org.Ce.eg.db Biocore Data Team Genome wide annotation for Worm
org.Cf.eg.db Biocore Data Team Genome wide annotation for Canine
org.Dm.eg.db Biocore Data Team Genome wide annotation for Fly
org.Dr.eg.db Biocore Data Team Genome wide annotation for Zebrafish
org.EcK12.eg.db Biocore Data Team Genome wide annotation for E coli strain K12
org.EcSakai.eg.db Biocore Data Team Genome wide annotation for E coli strain Sakai
org.Gg.eg.db Biocore Data Team Genome wide annotation for Chicken
org.Hs.eg.db Biocore Data Team Genome wide annotation for Human
org.Hs.ipi.db Hong Li A data package containing annotation data for org.Hs.ipi.db
org.Mm.eg.db Biocore Data Team Genome wide annotation for Mouse
org.Mmu.eg.db Biocore Data Team Genome wide annotation for Rhesus
org.Pf.plasmo.db Biocore Data Team Genome wide annotation for Malaria
org.Pt.eg.db Biocore Data Team Genome wide annotation for Chimp
org.Rn.eg.db Biocore Data Team Genome wide annotation for Rat
org.Sc.sgd.db Biocore Data Team Genome wide annotation for Yeast
org.Sco.eg.db Roxane Legaie Genome wide annotation for Streptomyces coelicolor
org.Ss.eg.db Biocore Data Team Genome wide annotation for Pig
org.Tgondii.eg.db Olivier Lucas Genome wide annotation for Toxoplasma gondii
org.Xl.eg.db Biocore Data Team Genome wide annotation for Xenopus
paeg1acdf Biocore Data Team paeg1acdf
paeg1aprobe Biocore Data Team Probe sequence data for microarrays of type paeg1a
PartheenMetaData.db Biocore Data Team PartheenMetaData http://swegene.onk.lu.se Annotation Data (PartheenMetaData)
pd.081229.hg18.promoter.medip.hx1 Martin Aryee Platform Design Info for NimbleGen 081229_hg18_promoter_medip_hx1
pd.2006.07.18.hg18.refseq.promoter Benilton Carvalho Platform Design Info for NimbleGen 2006-07-18_hg18_refseq_promoter
pd.2006.07.18.mm8.refseq.promoter Martin Aryee Platform Design Info for NimbleGen 2006-07-18_mm8_refseq_promoter
pd.2006.10.31.rn34.refseq.promoter Martin Aryee Platform Design Info for NimbleGen 2006-10-31_rn34_refseq_promoter
pd.ag Benilton Carvalho Platform Design Info for The Manufacturer's Name AG
pd.aragene.1.0.st Benilton Carvalho Platform Design Info for Affymetrix AraGene-1_0-st
pd.aragene.1.1.st Benilton Carvalho Platform Design Info for Affymetrix AraGene-1_1-st
pd.ath1.121501 Benilton Carvalho Platform Design Info for The Manufacturer's Name ATH1-121501
pd.barley1 Benilton Carvalho Platform Design Info for The Manufacturer's Name Barley1
pd.bovgene.1.0.st Benilton Carvalho Platform Design Info for Affymetrix BovGene-1_0-st
pd.bovgene.1.1.st Benilton Carvalho Platform Design Info for Affymetrix BovGene-1_1-st
pd.bovine Benilton Carvalho Platform Design Info for The Manufacturer's Name Bovine
pd.bsubtilis Benilton Carvalho Platform Design Info for The Manufacturer's Name Bsubtilis
pd.cangene.1.0.st Benilton Carvalho Platform Design Info for Affymetrix CanGene-1_0-st
pd.cangene.1.1.st Benilton Carvalho Platform Design Info for Affymetrix CanGene-1_1-st
pd.canine Benilton Carvalho Platform Design Info for The Manufacturer's Name Canine
pd.canine.2 Benilton Carvalho Platform Design Info for The Manufacturer's Name Canine_2
pd.celegans Benilton Carvalho Platform Design Info for The Manufacturer's Name Celegans
pd.charm.hg18.example Martin Aryee Platform Design Info for NimbleGen charm_hg18_example
pd.chicken Benilton Carvalho Platform Design Info for The Manufacturer's Name Chicken
pd.citrus Benilton Carvalho Platform Design Info for The Manufacturer's Name Citrus
pd.cotton Benilton Carvalho Platform Design Info for The Manufacturer's Name Cotton
pd.cyngene.1.0.st Benilton Carvalho Platform Design Info for Affymetrix CynGene-1_0-st
pd.cyngene.1.1.st Benilton Carvalho Platform Design Info for Affymetrix CynGene-1_1-st
pd.cyrgene.1.0.st Benilton Carvalho Platform Design Info for Affymetrix CyRGene-1_0-st
pd.cyrgene.1.1.st Benilton Carvalho Platform Design Info for Affymetrix CyRGene-1_1-st
pd.cytogenetics.array Benilton Carvalho Platform Design Info for Affymetrix Cytogenetics_Array
pd.drosgenome1 Benilton Carvalho Platform Design Info for The Manufacturer's Name DrosGenome1
pd.drosophila.2 Benilton Carvalho Platform Design Info for The Manufacturer's Name Drosophila_2
pd.e.coli.2 Benilton Carvalho Platform Design Info for The Manufacturer's Name E_coli_2
pd.ecoli Benilton Carvalho Platform Design Info for The Manufacturer's Name Ecoli
pd.ecoli.asv2 Benilton Carvalho Platform Design Info for The Manufacturer's Name Ecoli_ASv2
pd.equgene.1.0.st Benilton Carvalho Platform Design Info for Affymetrix EquGene-1_0-st
pd.equgene.1.1.st Benilton Carvalho Platform Design Info for Affymetrix EquGene-1_1-st
pd.feinberg.hg18.me.hx1 Martin Aryee Platform Design Info for NimbleGen feinberg_hg18_me_hx1
pd.feinberg.mm8.me.hx1 Martin Aryee Platform Design Info for NimbleGen feinberg_mm8_me_hx1
pd.felgene.1.0.st Benilton Carvalho Platform Design Info for Affymetrix FelGene-1_0-st
pd.felgene.1.1.st Benilton Carvalho Platform Design Info for Affymetrix FelGene-1_1-st
pd.genomewidesnp.5 Benilton Carvalho Platform Design Info for Affymetrix GenomeWideSNP_5
pd.genomewidesnp.6 Benilton Carvalho Platform Design Info for Affymetrix GenomeWideSNP_6
pd.hc.g110 Benilton Carvalho Platform Design Info for The Manufacturer's Name HC_G110
pd.hg.focus Benilton Carvalho Platform Design Info for The Manufacturer's Name HG-Focus
pd.hg.u133.plus.2 Benilton Carvalho Platform Design Info for The Manufacturer's Name HG-U133_Plus_2
pd.hg.u133a Benilton Carvalho Platform Design Info for The Manufacturer's Name HG-U133A
pd.hg.u133a.2 Benilton Carvalho Platform Design Info for The Manufacturer's Name HG-U133A_2
pd.hg.u133a.tag Benilton Carvalho Platform Design Info for The Manufacturer's Name HG-U133A_tag
pd.hg.u133b Benilton Carvalho Platform Design Info for The Manufacturer's Name HG-U133B
pd.hg.u219 Benilton Carvalho Platform Design Info for The Manufacturer's Name HG-U219
pd.hg.u95a Benilton Carvalho Platform Design Info for The Manufacturer's Name HG_U95A
pd.hg.u95av2 Benilton Carvalho Platform Design Info for The Manufacturer's Name HG_U95Av2
pd.hg.u95b Benilton Carvalho Platform Design Info for The Manufacturer's Name HG_U95B
pd.hg.u95c Benilton Carvalho Platform Design Info for The Manufacturer's Name HG_U95C
pd.hg.u95d Benilton Carvalho Platform Design Info for The Manufacturer's Name HG_U95D
pd.hg.u95e Benilton Carvalho Platform Design Info for The Manufacturer's Name HG_U95E
pd.hg18.60mer.expr Benilton Carvalho Platform Design Info for NimbleGen hg18_60mer_expr
pd.ht.hg.u133.plus.pm Benilton Carvalho Platform Design Info for The Manufacturer's Name HT_HG-U133_Plus_PM
pd.ht.hg.u133a Benilton Carvalho Platform Design Info for The Manufacturer's Name HT_HG-U133A
pd.ht.mg.430a Benilton Carvalho Platform Design Info for The Manufacturer's Name HT_MG-430A
pd.hu6800 Benilton Carvalho Platform Design Info for The Manufacturer's Name Hu6800
pd.huex.1.0.st.v2 Benilton Carvalho Platform Design Info for Affymetrix HuEx-1_0-st-v2
pd.hugene.1.0.st.v1 Benilton Carvalho Platform Design Info for Affymetrix HuGene-1_0-st-v1
pd.hugene.1.1.st.v1 Benilton Carvalho Platform Design Info for Affymetrix HuGene-1_1-st-v1
pd.hugene.2.0.st Benilton Carvalho Platform Design Info for Affymetrix HuGene-2_0-st
pd.hugene.2.1.st Benilton Carvalho Platform Design Info for Affymetrix HuGene-2_1-st
pd.maize Benilton Carvalho Platform Design Info for The Manufacturer's Name Maize
pd.mapping250k.nsp Benilton Carvalho Platform Design Info for Affymetrix Mapping250K_Nsp
pd.mapping250k.sty Benilton Carvalho Platform Design Info for Affymetrix Mapping250K_Sty
pd.mapping50k.hind240 Benilton Carvalho Platform Design Info for Affymetrix Mapping50K_Hind240
pd.mapping50k.xba240 Benilton Carvalho Platform Design Info for Affymetrix Mapping50K_Xba240
pd.medicago Benilton Carvalho Platform Design Info for The Manufacturer's Name Medicago
pd.mg.u74a Benilton Carvalho Platform Design Info for The Manufacturer's Name MG_U74A
pd.mg.u74av2 Benilton Carvalho Platform Design Info for The Manufacturer's Name MG_U74Av2
pd.mg.u74b Benilton Carvalho Platform Design Info for The Manufacturer's Name MG_U74B
pd.mg.u74bv2 Benilton Carvalho Platform Design Info for The Manufacturer's Name MG_U74Bv2
pd.mg.u74c Benilton Carvalho Platform Design Info for The Manufacturer's Name MG_U74C
pd.mg.u74cv2 Benilton Carvalho Platform Design Info for The Manufacturer's Name MG_U74Cv2
pd.mirna.1.0 Benilton Carvalho Platform Design Info for The Manufacturer's Name miRNA-1_0
pd.mirna.2.0 Benilton Carvalho Platform Design Info for Affymetrix miRNA-2_0
pd.mirna.3.0 Benilton Carvalho Platform Design Info for Affymetrix miRNA-3_0
pd.moe430a Benilton Carvalho Platform Design Info for The Manufacturer's Name MOE430A
pd.moe430b Benilton Carvalho Platform Design Info for The Manufacturer's Name MOE430B
pd.moex.1.0.st.v1 Benilton Carvalho Platform Design Info for Affymetrix MoEx-1_0-st-v1
pd.mogene.1.0.st.v1 Benilton Carvalho Platform Design Info for Affymetrix MoGene-1_0-st-v1
pd.mogene.1.1.st.v1 Benilton Carvalho Platform Design Info for Affymetrix MoGene-1_1-st-v1
pd.mouse430.2 Benilton Carvalho Platform Design Info for The Manufacturer's Name Mouse430_2
pd.mouse430a.2 Benilton Carvalho Platform Design Info for The Manufacturer's Name Mouse430A_2
pd.mu11ksuba Benilton Carvalho Platform Design Info for The Manufacturer's Name Mu11KsubA
pd.mu11ksubb Benilton Carvalho Platform Design Info for The Manufacturer's Name Mu11KsubB
pd.ovigene.1.0.st Benilton Carvalho Platform Design Info for Affymetrix OviGene-1_0-st
pd.ovigene.1.1.st Benilton Carvalho Platform Design Info for Affymetrix OviGene-1_1-st
pd.pae.g1a Benilton Carvalho Platform Design Info for The Manufacturer's Name Pae_G1a
pd.plasmodium.anopheles Benilton Carvalho Platform Design Info for The Manufacturer's Name Plasmodium_Anopheles
pd.poplar Benilton Carvalho Platform Design Info for The Manufacturer's Name Poplar
pd.porcine Benilton Carvalho Platform Design Info for The Manufacturer's Name Porcine
pd.porgene.1.0.st Benilton Carvalho Platform Design Info for Affymetrix PorGene-1_0-st
pd.porgene.1.1.st Benilton Carvalho Platform Design Info for Affymetrix PorGene-1_1-st
pd.rae230a Benilton Carvalho Platform Design Info for The Manufacturer's Name RAE230A
pd.rae230b Benilton Carvalho Platform Design Info for The Manufacturer's Name RAE230B
pd.raex.1.0.st.v1 Benilton Carvalho Platform Design Info for Affymetrix RaEx-1_0-st-v1
pd.ragene.1.0.st.v1 Benilton Carvalho Platform Design Info for Affymetrix RaGene-1_0-st-v1
pd.ragene.1.1.st.v1 Benilton Carvalho Platform Design Info for Affymetrix RaGene-1_1-st-v1
pd.rat230.2 Benilton Carvalho Platform Design Info for The Manufacturer's Name Rat230_2
pd.rcngene.1.1.st Benilton Carvalho Platform Design Info for Affymetrix RCnGene-1_1-st
pd.rg.u34a Benilton Carvalho Platform Design Info for The Manufacturer's Name RG_U34A
pd.rg.u34b Benilton Carvalho Platform Design Info for The Manufacturer's Name RG_U34B
pd.rg.u34c Benilton Carvalho Platform Design Info for The Manufacturer's Name RG_U34C
pd.rhegene.1.0.st Benilton Carvalho Platform Design Info for Affymetrix RheGene-1_0-st
pd.rhegene.1.1.st Benilton Carvalho Platform Design Info for Affymetrix RheGene-1_1-st
pd.rhesus Benilton Carvalho Platform Design Info for The Manufacturer's Name Rhesus
pd.rice Benilton Carvalho Platform Design Info for The Manufacturer's Name Rice
pd.rjpgene.1.1.st Benilton Carvalho Platform Design Info for Affymetrix RJpGene-1_1-st
pd.rn.u34 Benilton Carvalho Platform Design Info for The Manufacturer's Name RN_U34
pd.s.aureus Benilton Carvalho Platform Design Info for The Manufacturer's Name S_aureus
pd.soybean Benilton Carvalho Platform Design Info for The Manufacturer's Name Soybean
pd.soygene.1.1.st Benilton Carvalho Platform Design Info for Affymetrix SoyGene-1_1-st
pd.sugar.cane Benilton Carvalho Platform Design Info for The Manufacturer's Name Sugar_Cane
pd.tomato Benilton Carvalho Platform Design Info for The Manufacturer's Name Tomato
pd.u133.x3p Benilton Carvalho Platform Design Info for The Manufacturer's Name U133_X3P
pd.vitis.vinifera Benilton Carvalho Platform Design Info for The Manufacturer's Name Vitis_Vinifera
pd.wheat Benilton Carvalho Platform Design Info for The Manufacturer's Name wheat
pd.x.laevis.2 Benilton Carvalho Platform Design Info for The Manufacturer's Name X_laevis_2
pd.x.tropicalis Benilton Carvalho Platform Design Info for The Manufacturer's Name X_tropicalis
pd.xenopus.laevis Benilton Carvalho Platform Design Info for The Manufacturer's Name Xenopus_laevis
pd.yeast.2 Benilton Carvalho Platform Design Info for The Manufacturer's Name Yeast_2
pd.yg.s98 Benilton Carvalho Platform Design Info for The Manufacturer's Name YG_S98
pd.zebgene.1.0.st Benilton Carvalho Platform Design Info for Affymetrix ZebGene-1_0-st
pd.zebgene.1.1.st Benilton Carvalho Platform Design Info for Affymetrix ZebGene-1_1-st
pd.zebrafish Benilton Carvalho Platform Design Info for The Manufacturer's Name Zebrafish
pedbarrayv10.db Biocore Data Team FHCRC Nelson Lab pedbarrayv10 Annotation Data (pedbarrayv10)
pedbarrayv9.db Biocore Data Team FHCRC Nelson Lab pedbarrayv9 Annotation Data (pedbarrayv9)
PFAM.db Biocore Data Team A set of protein ID mappings for PFAM
pig.db0 Biocore Team c/o BioC user list Base Level Annotation databases for pig
plasmodiumanophelescdf Biocore Data Team plasmodiumanophelescdf
plasmodiumanophelesprobe Biocore Data Team Probe sequence data for microarrays of type plasmodiumanopheles
POCRCannotation.db Biocore Data Team A package containing metadata for POCRC arrays
PolyPhen.Hsapiens.dbSNP131 Valerie Obenchain PolyPhen Predictions for Homo sapiens dbSNP build 131
poplarcdf Biocore Data Team poplarcdf
poplarprobe Biocore Data Team Probe sequence data for microarrays of type poplar
porcine.db Biocore Data Team Affymetrix porcine annotation data (chip porcine)
porcinecdf Biocore Data Team porcinecdf
porcineprobe Biocore Data Team Probe sequence data for microarrays of type porcine
primeviewcdf Biocore Data Team primeviewcdf
primeviewprobe Biocore Data Team Probe sequence data for microarrays of type primeview
r10kcod.db Diego Diez GE CodeLink UniSet Rat I Bioarray (~10 000 rat gene targets) annotation data (chip r10kcod)
rae230a.db Biocore Data Team Affymetrix Rat Expression Set 230 annotation data (chip rae230a)
rae230acdf Biocore Data Team rae230acdf
rae230aprobe Biocore Data Team Probe sequence data for microarrays of type rae230a
rae230b.db Biocore Data Team Affymetrix Rat Expression Set 230 annotation data (chip rae230b)
rae230bcdf Biocore Data Team rae230bcdf
rae230bprobe Biocore Data Team Probe sequence data for microarrays of type rae230b
RaExExonProbesetLocation Raffaele A. Calogero Exon-level probeset chromosome location for microarrays of type RaEx
ragene10stprobeset.db Li, Arthur Affymetrix Rat Gene 1.0-ST Array Probeset Revision 7 annotation data (chip ragene10stprobeset)
ragene10sttranscriptcluster.db Li, Arthur Affymetrix Rat Gene 1.0-ST Array Transcriptcluster Revision 7 annotation data (chip ragene10sttranscriptcluster)
ragene10stv1cdf Biocore Data Team ragene10stv1cdf
ragene10stv1probe Biocore Data Team Probe sequence data for microarrays of type ragene10stv1
ragene11stprobeset.db Li, Arthur Affymetrix Rat Gene 1.1-ST Array Probeset Revision 4 annotation data (chip ragene11stprobeset)
ragene11sttranscriptcluster.db Li, Arthur Affymetrix Rat Gene 1.1-ST Array Transcriptcluster Revision 4 annotation data (chip ragene11sttranscriptcluster)
rat.db0 Biocore Team c/o BioC user list Base Level Annotation databases for rat
rat2302.db Biocore Data Team Affymetrix Rat Genome 230 2.0 Array annotation data (chip rat2302)
rat2302cdf Biocore Data Team rat2302cdf
rat2302probe Biocore Data Team Probe sequence data for microarrays of type rat2302
ratCHRLOC Biocore Data Team A data package containing annotation data for ratCHRLOC
rattoxfxcdf Biocore Data Team rattoxfxcdf
rattoxfxprobe Biocore Data Team Probe sequence data for microarrays of type rattoxfx
Rattus.norvegicus Bioconductor Package Maintainer Annotation package for the Rattus.norvegicus object
reactome.db Willem Ligtenberg A set of annotation maps for reactome
rgu34a.db Biocore Data Team Affymetrix Rat Genome U34 Set annotation data (chip rgu34a)
rgu34acdf Biocore Data Team rgu34acdf
rgu34aprobe Biocore Data Team Probe sequence data for microarrays of type rgu34a
rgu34b.db Biocore Data Team Affymetrix Rat Genome U34 Set annotation data (chip rgu34b)
rgu34bcdf Biocore Data Team rgu34bcdf
rgu34bprobe Biocore Data Team Probe sequence data for microarrays of type rgu34b
rgu34c.db Biocore Data Team Affymetrix Rat Genome U34 Set annotation data (chip rgu34c)
rgu34ccdf Biocore Data Team rgu34ccdf
rgu34cprobe Biocore Data Team Probe sequence data for microarrays of type rgu34c
rguatlas4k.db Biocore Data Team Clontech BD Atlas Long Oligos Rat 4K annotation data (chip rguatlas4k)
rgug4105a.db Biocore Data Team Agilent annotation data (chip rgug4105a)
rgug4130a.db Biocore Data Team Agilent Rat annotation data (chip rgug4130a)
rgug4131a.db Biocore Data Team Agilent "Rat Genome, Whole" annotation data (chip rgug4131a)
rhesus.db0 Biocore Team c/o BioC user list Base Level Annotation databases for rhesus
rhesuscdf Biocore Data Team rhesuscdf
rhesusprobe Biocore Data Team Probe sequence data for microarrays of type rhesus
ri16cod.db Diego Diez GE CodeLink Rat Inflammation 16 Bioarray annotation data (chip ri16cod)
ricecdf Biocore Data Team ricecdf
riceprobe Biocore Data Team Probe sequence data for microarrays of type rice
RmiR.Hs.miRNA Francesco Favero Various databases of microRNA Targets
RmiR.hsa Francesco Favero Various databases of microRNA Targets
RnAgilentDesign028282.db Biocore Data Team Agilent Chips that use Agilent design number 028282 annotation data (chip RnAgilentDesign028282)
rnu34.db Biocore Data Team Affymetrix Rat Neurobiology U34 Array annotation data (chip rnu34)
rnu34cdf Biocore Data Team rnu34cdf
rnu34probe Biocore Data Team Probe sequence data for microarrays of type rnu34
Roberts2005Annotation.db Biocore Data Team Roberts2005Annotation Annotation Data (Roberts2005Annotation)
rtu34.db Biocore Data Team Affymetrix Rat Toxicology U34 Array annotation data (chip rtu34)
rtu34cdf Biocore Data Team rtu34cdf
rtu34probe Biocore Data Team Probe sequence data for microarrays of type rtu34
rwgcod.db Diego Diez GE CodeLink Rat Whole Genome Bioarray (~34 000 rat gene targets) annotation data (chip rwgcod)
saureuscdf Biocore Data Team saureuscdf
saureusprobe Biocore Data Team Probe sequence data for microarrays of type saureus
seqnames.db Biocore Data Team Chromosome Name translations
SHDZ.db Biocore Data Team SHDZ http://genome-www5.stanford.edu/ Annotation Data (SHDZ)
SIFT.Hsapiens.dbSNP132 Valerie Obenchain SIFT Predictions for Homo sapiens dbSNP build 132
SNPlocs.Hsapiens.dbSNP.20090506 H. Pages SNP locations for Homo sapiens (dbSNP Build 130)
SNPlocs.Hsapiens.dbSNP.20100427 H. Pages SNP locations for Homo sapiens (dbSNP BUILD 131)
SNPlocs.Hsapiens.dbSNP.20101109 H. Pages SNP locations for Homo sapiens (dbSNP Build 132)
SNPlocs.Hsapiens.dbSNP.20110815 H. Pages SNP locations for Homo sapiens (dbSNP Build 134)
SNPlocs.Hsapiens.dbSNP.20111119 H. Pages SNP locations for Homo sapiens (dbSNP Build 135)
SNPlocs.Hsapiens.dbSNP.20120608 H. Pages SNP locations for Homo sapiens (dbSNP Build 137)
soybeancdf Biocore Data Team soybeancdf
soybeanprobe Biocore Data Team Probe sequence data for microarrays of type soybean
sugarcanecdf Biocore Data Team sugarcanecdf
sugarcaneprobe Biocore Data Team Probe sequence data for microarrays of type sugarcane
targetscan.Hs.eg.db James F. Reid TargetScan miRNA target predictions for human
targetscan.Mm.eg.db James F. Reid TargetScan miRNA target predictions for mouse
test1cdf Biocore Data Team test1cdf
test2cdf Biocore Data Team test2cdf
test3cdf Biocore Data Team test3cdf
test3probe Biocore Data Team Probe sequence data for microarrays of type test3
tomatocdf Biocore Data Team tomatocdf
tomatoprobe Biocore Data Team Probe sequence data for microarrays of type tomato
TxDb.Athaliana.BioMart.plantsmart10 Biocore Data Team Annotation package for the Athaliana_BioMart_plantsmart10_TxDb object
TxDb.Athaliana.BioMart.plantsmart12 Biocore Data Team Annotation package for TranscriptDb object(s)
TxDb.Athaliana.BioMart.plantsmart14 Biocore Data Team Annotation package for TranscriptDb object(s)
TxDb.Celegans.UCSC.ce6.ensGene Biocore Data Team Annotation package for TranscriptDb object(s)
TxDb.Dmelanogaster.UCSC.dm3.ensGene Biocore Data Team Annotation package for TranscriptDb object(s)
TxDb.Hsapiens.UCSC.hg18.knownGene Biocore Data Team Annotation package for TranscriptDb object(s)
TxDb.Hsapiens.UCSC.hg19.knownGene Biocore Data Team Annotation package for TranscriptDb object(s)
TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts Biocore Data Team Annotation package for TranscriptDb object(s)
TxDb.Mmusculus.UCSC.mm10.ensGene Biocore Data Team Annotation package for TranscriptDb object(s)
TxDb.Mmusculus.UCSC.mm10.knownGene Biocore Data Team Annotation package for TranscriptDb object(s)
TxDb.Mmusculus.UCSC.mm9.knownGene Biocore Data Team Annotation package for TranscriptDb object(s)
TxDb.Rnorvegicus.UCSC.rn4.ensGene Biocore Data Team Annotation package for TranscriptDb object(s)
TxDb.Rnorvegicus.UCSC.rn5.refGene Biocore Data Team Annotation package for TranscriptDb object(s)
TxDb.Scerevisiae.UCSC.sacCer2.sgdGene Biocore Data Team Annotation package for TranscriptDb object(s)
TxDb.Scerevisiae.UCSC.sacCer3.sgdGene Biocore Data Team Annotation package for TranscriptDb object(s)
u133aaofav2cdf Biocore Data Team u133aaofav2cdf
u133x3p.db Biocore Data Team Affymetrix Human X3P Array annotation data (chip u133x3p)
u133x3pcdf Biocore Data Team u133x3pcdf
u133x3pprobe Biocore Data Team Probe sequence data for microarrays of type u133x3p
vitisviniferacdf Biocore Data Team vitisviniferacdf
vitisviniferaprobe Biocore Data Team Probe sequence data for microarrays of type vitisvinifera
wheatcdf Biocore Data Team wheatcdf
wheatprobe Biocore Data Team Probe sequence data for microarrays of type wheat
worm.db0 Biocore Team c/o BioC user list Base Level Annotation databases for worm
xenopus.db0 Biocore Team c/o BioC user list Base Level Annotation databases for xenopus
xenopuslaeviscdf Biocore Data Team xenopuslaeviscdf
xenopuslaevisprobe Biocore Data Team Probe sequence data for microarrays of type xenopuslaevis
xlaevis.db Biocore Data Team Affymetrix Xenopus laevis annotation data (chip xlaevis)
xlaevis2cdf Biocore Data Team xlaevis2cdf
xlaevis2probe Biocore Data Team Probe sequence data for microarrays of type xlaevis2
xtropicaliscdf Biocore Data Team xtropicaliscdf
xtropicalisprobe Biocore Data Team Probe sequence data for microarrays of type xtropicalis
ye6100subacdf Biocore Data Team ye6100subacdf
ye6100subbcdf Biocore Data Team ye6100subbcdf
ye6100subccdf Biocore Data Team ye6100subccdf
ye6100subdcdf Biocore Data Team ye6100subdcdf
yeast.db0 Biocore Team c/o BioC user list Base Level Annotation databases for yeast
yeast2.db Biocore Data Team Affymetrix Yeast Genome 2.0 Array annotation data (chip yeast2)
yeast2cdf Biocore Data Team yeast2cdf
yeast2probe Biocore Data Team Probe sequence data for microarrays of type yeast2
ygs98.db Biocore Data Team Affymetrix Yeast Genome S98 Array annotation data (chip ygs98)
ygs98cdf Biocore Data Team ygs98cdf
ygs98probe Biocore Data Team Probe sequence data for microarrays of type ygs98
zebrafish.db Biocore Data Team Affymetrix zebrafish annotation data (chip zebrafish)
zebrafish.db0 Biocore Team c/o BioC user list Base Level Annotation databases for zebrafish
zebrafishcdf Biocore Data Team zebrafishcdf
zebrafishprobe Biocore Data Team Probe sequence data for microarrays of type zebrafish

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