xmapcore

Core access to the xmap database (installed separately)

Bioconductor version: Release (2.11)

xmapcore is deprecated and will not be supported after Bioconductor release 2.10. It has been superceded by a new package 'annmap'. xmapcore allows mapping between genetic features and any available Affymetrix Exon arrays for Homo Sapiens, Mus Musculus, Rattus Norvegicus and Schizosaccharomyces Pombe.

Author: Tim Yates <tyates at picr.man.ac.uk>

Maintainer: Tim Yates <tyates at picr.man.ac.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("xmapcore")

To cite this package in a publication, start R and enter:

    citation("xmapcore")

Documentation

PDF		cookbook.pdf
PDF		SplicingIndexExample.pdf
PDF	R Script	xmapcore installation instruction
PDF	R Script	xmapcore primer
PDF		Reference Manual

Details

biocViews	Annotation, Bioinformatics, Microarray, OneChannel, ReportWriting, Software, Transcription, Visualization
Version	1.12.0
In Bioconductor since	BioC 2.6 (R-2.11)
License	GPL-2
Depends	R (>= 2.8.0), methods, IRanges
Imports	DBI, RMySQL (>= 0.6-0), digest, Biobase
Suggests	RUnit
System Requirements
URL	http://xmap.picr.man.ac.uk, http://www.bioconductor.org
Depends On Me	rnaSeqMap
Imports Me
Suggests Me

Package Downloads

Package Source	xmapcore_1.12.0.tar.gz
Windows Binary
MacOS 10.5 (Leopard)	xmapcore_1.12.0.tgz
Package Downloads Report	Download Stats

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