Core access to the xmap database (installed separately)

Bioconductor version: Release (2.11)

xmapcore is deprecated and will not be supported after Bioconductor release 2.10. It has been superceded by a new package 'annmap'. xmapcore allows mapping between genetic features and any available Affymetrix Exon arrays for Homo Sapiens, Mus Musculus, Rattus Norvegicus and Schizosaccharomyces Pombe.

Author: Tim Yates <tyates at picr.man.ac.uk>

Maintainer: Tim Yates <tyates at picr.man.ac.uk>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF cookbook.pdf
PDF SplicingIndexExample.pdf
PDF R Script xmapcore installation instruction
PDF R Script xmapcore primer
PDF   Reference Manual


biocViews Annotation, Bioinformatics, Microarray, OneChannel, ReportWriting, Software, Transcription, Visualization
Version 1.12.0
In Bioconductor since BioC 2.6 (R-2.11)
License GPL-2
Depends R (>= 2.8.0), methods, IRanges
Imports DBI, RMySQL (>= 0.6-0), digest, Biobase
Suggests RUnit
System Requirements
URL http://xmap.picr.man.ac.uk, http://www.bioconductor.org
Depends On Me rnaSeqMap
Imports Me
Suggests Me

Package Downloads

Package Source xmapcore_1.12.0.tar.gz
Windows Binary
MacOS 10.5 (Leopard) xmapcore_1.12.0.tgz
Package Downloads Report Download Stats

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center