waveTiling

Wavelet-Based Models for Tiling Array Transcriptome Analysis

Bioconductor version: Release (2.11)

This package is designed to conduct transcriptome analysis for tiling arrays based on fast wavelet-based functional models.

Author: Kristof De Beuf <kristof.debeuf at UGent.be>, Peter Pipelers <peter.pipelers at ugent.be> and Lieven Clement <lieven.clement at gmail.com>

Maintainer: Kristof De Beuf <kristof.debeuf at UGent.be>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("waveTiling")

To cite this package in a publication, start R and enter:

    citation("waveTiling")

biocViews	DifferentialExpression, GeneExpression, MicroArray, Software, TimeCourse
Version	1.0.0
In Bioconductor since	BioC 2.11 (R-2.15)
License	GPL (>=2)
Depends	oligo, oligoClasses, Biobase, Biostrings, GenomeGraphs
Imports	methods, affy, preprocessCore, GenomicRanges, waveslim, IRanges
Suggests	BSgenome, BSgenome.Athaliana.TAIR.TAIR9, waveTilingData, pd.atdschip.tiling, TxDb.Athaliana.BioMart.plantsmart12
System Requirements
URL	https://r-forge.r-project.org/projects/wavetiling/
Depends On Me
Imports Me
Suggests Me

Common Bioconductor workflows include:

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!